Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13465

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS13455 and RR42_RS13460 are separated by 53 nucleotidesRR42_RS13460 and RR42_RS13465 overlap by 4 nucleotidesRR42_RS13465 and RR42_RS13470 are separated by 246 nucleotides RR42_RS13455: RR42_RS13455 - phosphate ABC transporter ATP-binding protein, at 2,903,012 to 2,903,800 _RS13455 RR42_RS13460: RR42_RS13460 - phosphate transporter permease subunit PtsA, at 2,903,854 to 2,904,756 _RS13460 RR42_RS13465: RR42_RS13465 - phosphate transporter permease subunit PstC, at 2,904,753 to 2,905,718 _RS13465 RR42_RS13470: RR42_RS13470 - phosphate ABC transporter substrate-binding protein, at 2,905,965 to 2,906,999 _RS13470 Position (kb) 2904 2905 2906Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2904.113 kb on + strand, within RR42_RS13460at 2904.113 kb on + strand, within RR42_RS13460at 2904.113 kb on + strand, within RR42_RS13460at 2904.363 kb on + strand, within RR42_RS13460at 2904.413 kb on + strand, within RR42_RS13460at 2904.413 kb on + strand, within RR42_RS13460at 2904.482 kb on + strand, within RR42_RS13460at 2904.513 kb on + strand, within RR42_RS13460at 2904.726 kb on + strandat 2904.959 kb on + strand, within RR42_RS13465at 2904.959 kb on + strand, within RR42_RS13465at 2905.162 kb on + strand, within RR42_RS13465at 2905.487 kb on - strand, within RR42_RS13465at 2905.487 kb on - strand, within RR42_RS13465at 2905.508 kb on - strand, within RR42_RS13465at 2905.698 kb on + strandat 2905.709 kb on + strandat 2905.710 kb on - strandat 2905.726 kb on + strandat 2905.838 kb on - strandat 2905.838 kb on - strandat 2905.849 kb on + strandat 2905.850 kb on - strandat 2905.855 kb on + strandat 2905.855 kb on + strandat 2905.856 kb on - strandat 2905.856 kb on - strandat 2905.856 kb on - strandat 2905.856 kb on - strandat 2905.856 kb on - strandat 2905.861 kb on + strandat 2905.861 kb on + strandat 2905.861 kb on + strandat 2905.862 kb on - strandat 2905.868 kb on - strandat 2905.873 kb on + strandat 2905.973 kb on - strandat 2905.973 kb on - strandat 2906.052 kb on + strandat 2906.052 kb on + strandat 2906.056 kb on + strandat 2906.092 kb on + strand, within RR42_RS13470at 2906.154 kb on + strand, within RR42_RS13470at 2906.224 kb on + strand, within RR42_RS13470at 2906.224 kb on + strand, within RR42_RS13470at 2906.224 kb on + strand, within RR42_RS13470at 2906.224 kb on + strand, within RR42_RS13470at 2906.224 kb on + strand, within RR42_RS13470at 2906.225 kb on - strand, within RR42_RS13470at 2906.494 kb on + strand, within RR42_RS13470at 2906.494 kb on + strand, within RR42_RS13470at 2906.494 kb on + strand, within RR42_RS13470at 2906.494 kb on + strand, within RR42_RS13470at 2906.494 kb on + strand, within RR42_RS13470at 2906.626 kb on + strand, within RR42_RS13470at 2906.626 kb on + strand, within RR42_RS13470at 2906.627 kb on - strand, within RR42_RS13470at 2906.627 kb on - strand, within RR42_RS13470

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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2,904,113 + RR42_RS13460 0.29 -0.3
2,904,113 + RR42_RS13460 0.29 -1.0
2,904,113 + RR42_RS13460 0.29 +1.0
2,904,363 + RR42_RS13460 0.56 +0.6
2,904,413 + RR42_RS13460 0.62 -0.4
2,904,413 + RR42_RS13460 0.62 -1.4
2,904,482 + RR42_RS13460 0.70 +0.3
2,904,513 + RR42_RS13460 0.73 -1.4
2,904,726 + +2.1
2,904,959 + RR42_RS13465 0.21 -0.5
2,904,959 + RR42_RS13465 0.21 -0.9
2,905,162 + RR42_RS13465 0.42 +0.1
2,905,487 - RR42_RS13465 0.76 -1.9
2,905,487 - RR42_RS13465 0.76 +0.1
2,905,508 - RR42_RS13465 0.78 -0.6
2,905,698 + -0.5
2,905,709 + -2.8
2,905,710 - -0.5
2,905,726 + +0.1
2,905,838 - +0.5
2,905,838 - +0.2
2,905,849 + -0.9
2,905,850 - +0.1
2,905,855 + -0.6
2,905,855 + -0.5
2,905,856 - +1.7
2,905,856 - +0.3
2,905,856 - +0.2
2,905,856 - -0.7
2,905,856 - -1.1
2,905,861 + +1.1
2,905,861 + -1.0
2,905,861 + -0.5
2,905,862 - -0.2
2,905,868 - +0.2
2,905,873 + -0.0
2,905,973 - +0.6
2,905,973 - -1.4
2,906,052 + +0.4
2,906,052 + -0.3
2,906,056 + -0.0
2,906,092 + RR42_RS13470 0.12 +0.3
2,906,154 + RR42_RS13470 0.18 +0.5
2,906,224 + RR42_RS13470 0.25 +1.5
2,906,224 + RR42_RS13470 0.25 -1.3
2,906,224 + RR42_RS13470 0.25 -0.5
2,906,224 + RR42_RS13470 0.25 -0.6
2,906,224 + RR42_RS13470 0.25 -0.5
2,906,225 - RR42_RS13470 0.25 +0.1
2,906,494 + RR42_RS13470 0.51 -0.9
2,906,494 + RR42_RS13470 0.51 -0.4
2,906,494 + RR42_RS13470 0.51 -1.2
2,906,494 + RR42_RS13470 0.51 -0.9
2,906,494 + RR42_RS13470 0.51 -0.9
2,906,626 + RR42_RS13470 0.64 -0.1
2,906,626 + RR42_RS13470 0.64 -0.9
2,906,627 - RR42_RS13470 0.64 -1.7
2,906,627 - RR42_RS13470 0.64 -0.5

Or see this region's nucleotide sequence