Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13040

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS13035 and RR42_RS13040 are separated by 110 nucleotidesRR42_RS13040 and RR42_RS13045 are separated by 99 nucleotidesRR42_RS13045 and RR42_RS13050 are separated by 174 nucleotides RR42_RS13035: RR42_RS13035 - amino acid acetyltransferase, at 2,808,618 to 2,810,054 _RS13035 RR42_RS13040: RR42_RS13040 - iron transporter, at 2,810,165 to 2,810,440 _RS13040 RR42_RS13045: RR42_RS13045 - ribose-5-phosphate isomerase A, at 2,810,540 to 2,811,226 _RS13045 RR42_RS13050: RR42_RS13050 - transaldolase, at 2,811,401 to 2,812,339 _RS13050 Position (kb) 2810 2811Strain fitness (log2 ratio) -2 -1 0 1 2at 2810.094 kb on + strandat 2810.094 kb on + strandat 2810.095 kb on - strandat 2810.095 kb on - strandat 2810.099 kb on + strandat 2810.137 kb on + strandat 2810.138 kb on - strandat 2810.381 kb on + strand, within RR42_RS13040at 2810.381 kb on + strand, within RR42_RS13040at 2810.382 kb on - strand, within RR42_RS13040at 2810.417 kb on + strandat 2810.418 kb on - strandat 2810.418 kb on - strandat 2810.418 kb on - strandat 2811.261 kb on - strandat 2811.308 kb on + strandat 2811.309 kb on + strandat 2811.309 kb on + strandat 2811.310 kb on - strandat 2811.310 kb on - strandat 2811.382 kb on + strandat 2811.382 kb on + strandat 2811.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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2,810,094 + +0.3
2,810,094 + -0.6
2,810,095 - +0.1
2,810,095 - +0.0
2,810,099 + +1.0
2,810,137 + -0.8
2,810,138 - +0.2
2,810,381 + RR42_RS13040 0.78 -1.8
2,810,381 + RR42_RS13040 0.78 +0.2
2,810,382 - RR42_RS13040 0.79 -1.0
2,810,417 + -1.0
2,810,418 - -0.5
2,810,418 - -0.1
2,810,418 - +0.1
2,811,261 - -0.5
2,811,308 + +2.3
2,811,309 + +0.0
2,811,309 + +1.0
2,811,310 - +1.0
2,811,310 - +0.3
2,811,382 + +0.6
2,811,382 + +0.4
2,811,383 - +0.8

Or see this region's nucleotide sequence