Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12325

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS12315 and RR42_RS12320 are separated by 16 nucleotidesRR42_RS12320 and RR42_RS12325 are separated by 252 nucleotidesRR42_RS12325 and RR42_RS12330 are separated by 31 nucleotidesRR42_RS12330 and RR42_RS12335 are separated by 85 nucleotides RR42_RS12315: RR42_RS12315 - transcriptional regulator, at 2,644,109 to 2,645,002 _RS12315 RR42_RS12320: RR42_RS12320 - hypothetical protein, at 2,645,019 to 2,645,252 _RS12320 RR42_RS12325: RR42_RS12325 - glutathione S-transferase, at 2,645,505 to 2,646,140 _RS12325 RR42_RS12330: RR42_RS12330 - glutathione S-transferase, at 2,646,172 to 2,646,801 _RS12330 RR42_RS12335: RR42_RS12335 - twin-arginine translocation pathway signal protein, at 2,646,887 to 2,648,188 _RS12335 Position (kb) 2645 2646 2647Strain fitness (log2 ratio) -2 -1 0 1 2at 2645.241 kb on - strandat 2645.332 kb on - strandat 2645.478 kb on + strandat 2645.478 kb on + strandat 2645.479 kb on - strandat 2645.479 kb on - strandat 2645.490 kb on - strandat 2645.572 kb on + strand, within RR42_RS12325at 2645.680 kb on + strand, within RR42_RS12325at 2645.680 kb on + strand, within RR42_RS12325at 2645.681 kb on - strand, within RR42_RS12325at 2645.681 kb on - strand, within RR42_RS12325at 2645.740 kb on + strand, within RR42_RS12325at 2645.756 kb on - strand, within RR42_RS12325at 2645.908 kb on + strand, within RR42_RS12325at 2646.041 kb on + strand, within RR42_RS12325at 2646.042 kb on - strand, within RR42_RS12325at 2646.062 kb on - strand, within RR42_RS12325at 2646.135 kb on - strandat 2646.135 kb on - strandat 2646.194 kb on + strandat 2646.231 kb on - strandat 2646.231 kb on - strandat 2646.345 kb on + strand, within RR42_RS12330at 2646.345 kb on + strand, within RR42_RS12330at 2646.346 kb on - strand, within RR42_RS12330at 2646.347 kb on + strand, within RR42_RS12330at 2646.347 kb on + strand, within RR42_RS12330at 2646.347 kb on + strand, within RR42_RS12330at 2646.347 kb on + strand, within RR42_RS12330at 2646.347 kb on + strand, within RR42_RS12330at 2646.572 kb on + strand, within RR42_RS12330at 2646.572 kb on + strand, within RR42_RS12330at 2646.572 kb on + strand, within RR42_RS12330at 2646.573 kb on - strand, within RR42_RS12330at 2646.672 kb on - strand, within RR42_RS12330at 2646.755 kb on - strandat 2646.808 kb on + strandat 2646.809 kb on - strandat 2646.852 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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2,645,241 - -0.7
2,645,332 - -0.3
2,645,478 + -0.0
2,645,478 + -0.2
2,645,479 - +0.3
2,645,479 - -0.1
2,645,490 - -0.0
2,645,572 + RR42_RS12325 0.11 -2.7
2,645,680 + RR42_RS12325 0.28 -0.2
2,645,680 + RR42_RS12325 0.28 -0.2
2,645,681 - RR42_RS12325 0.28 -1.4
2,645,681 - RR42_RS12325 0.28 -0.4
2,645,740 + RR42_RS12325 0.37 -1.5
2,645,756 - RR42_RS12325 0.39 -0.3
2,645,908 + RR42_RS12325 0.63 -0.8
2,646,041 + RR42_RS12325 0.84 -0.3
2,646,042 - RR42_RS12325 0.84 -0.0
2,646,062 - RR42_RS12325 0.88 -1.0
2,646,135 - -0.6
2,646,135 - +0.2
2,646,194 + -0.2
2,646,231 - +0.3
2,646,231 - +2.2
2,646,345 + RR42_RS12330 0.27 -0.6
2,646,345 + RR42_RS12330 0.27 -1.1
2,646,346 - RR42_RS12330 0.28 -1.4
2,646,347 + RR42_RS12330 0.28 +0.1
2,646,347 + RR42_RS12330 0.28 +0.3
2,646,347 + RR42_RS12330 0.28 -1.0
2,646,347 + RR42_RS12330 0.28 +1.3
2,646,347 + RR42_RS12330 0.28 -0.2
2,646,572 + RR42_RS12330 0.63 +0.2
2,646,572 + RR42_RS12330 0.63 -0.2
2,646,572 + RR42_RS12330 0.63 -0.5
2,646,573 - RR42_RS12330 0.64 -0.3
2,646,672 - RR42_RS12330 0.79 -0.4
2,646,755 - -0.4
2,646,808 + +0.7
2,646,809 - -1.1
2,646,852 - -1.2

Or see this region's nucleotide sequence