Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS12315 and RR42_RS12320 are separated by 16 nucleotides RR42_RS12320 and RR42_RS12325 are separated by 252 nucleotides RR42_RS12325 and RR42_RS12330 are separated by 31 nucleotides RR42_RS12330 and RR42_RS12335 are separated by 85 nucleotides
RR42_RS12315: RR42_RS12315 - transcriptional regulator, at 2,644,109 to 2,645,002
_RS12315
RR42_RS12320: RR42_RS12320 - hypothetical protein, at 2,645,019 to 2,645,252
_RS12320
RR42_RS12325: RR42_RS12325 - glutathione S-transferase, at 2,645,505 to 2,646,140
_RS12325
RR42_RS12330: RR42_RS12330 - glutathione S-transferase, at 2,646,172 to 2,646,801
_RS12330
RR42_RS12335: RR42_RS12335 - twin-arginine translocation pathway signal protein, at 2,646,887 to 2,648,188
_RS12335
Position (kb)
2645
2646
2647 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2645.241 kb on - strand at 2645.332 kb on - strand at 2645.478 kb on + strand at 2645.478 kb on + strand at 2645.479 kb on - strand at 2645.479 kb on - strand at 2645.490 kb on - strand at 2645.572 kb on + strand, within RR42_RS12325 at 2645.680 kb on + strand, within RR42_RS12325 at 2645.680 kb on + strand, within RR42_RS12325 at 2645.681 kb on - strand, within RR42_RS12325 at 2645.681 kb on - strand, within RR42_RS12325 at 2645.740 kb on + strand, within RR42_RS12325 at 2645.756 kb on - strand, within RR42_RS12325 at 2645.908 kb on + strand, within RR42_RS12325 at 2646.041 kb on + strand, within RR42_RS12325 at 2646.042 kb on - strand, within RR42_RS12325 at 2646.062 kb on - strand, within RR42_RS12325 at 2646.135 kb on - strand at 2646.135 kb on - strand at 2646.194 kb on + strand at 2646.231 kb on - strand at 2646.231 kb on - strand at 2646.345 kb on + strand, within RR42_RS12330 at 2646.345 kb on + strand, within RR42_RS12330 at 2646.346 kb on - strand, within RR42_RS12330 at 2646.347 kb on + strand, within RR42_RS12330 at 2646.347 kb on + strand, within RR42_RS12330 at 2646.347 kb on + strand, within RR42_RS12330 at 2646.347 kb on + strand, within RR42_RS12330 at 2646.347 kb on + strand, within RR42_RS12330 at 2646.572 kb on + strand, within RR42_RS12330 at 2646.572 kb on + strand, within RR42_RS12330 at 2646.572 kb on + strand, within RR42_RS12330 at 2646.573 kb on - strand, within RR42_RS12330 at 2646.672 kb on - strand, within RR42_RS12330 at 2646.755 kb on - strand at 2646.808 kb on + strand at 2646.809 kb on - strand at 2646.852 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 2,645,241 - -0.7 2,645,332 - -0.3 2,645,478 + -0.0 2,645,478 + -0.2 2,645,479 - +0.3 2,645,479 - -0.1 2,645,490 - -0.0 2,645,572 + RR42_RS12325 0.11 -2.7 2,645,680 + RR42_RS12325 0.28 -0.2 2,645,680 + RR42_RS12325 0.28 -0.2 2,645,681 - RR42_RS12325 0.28 -1.4 2,645,681 - RR42_RS12325 0.28 -0.4 2,645,740 + RR42_RS12325 0.37 -1.5 2,645,756 - RR42_RS12325 0.39 -0.3 2,645,908 + RR42_RS12325 0.63 -0.8 2,646,041 + RR42_RS12325 0.84 -0.3 2,646,042 - RR42_RS12325 0.84 -0.0 2,646,062 - RR42_RS12325 0.88 -1.0 2,646,135 - -0.6 2,646,135 - +0.2 2,646,194 + -0.2 2,646,231 - +0.3 2,646,231 - +2.2 2,646,345 + RR42_RS12330 0.27 -0.6 2,646,345 + RR42_RS12330 0.27 -1.1 2,646,346 - RR42_RS12330 0.28 -1.4 2,646,347 + RR42_RS12330 0.28 +0.1 2,646,347 + RR42_RS12330 0.28 +0.3 2,646,347 + RR42_RS12330 0.28 -1.0 2,646,347 + RR42_RS12330 0.28 +1.3 2,646,347 + RR42_RS12330 0.28 -0.2 2,646,572 + RR42_RS12330 0.63 +0.2 2,646,572 + RR42_RS12330 0.63 -0.2 2,646,572 + RR42_RS12330 0.63 -0.5 2,646,573 - RR42_RS12330 0.64 -0.3 2,646,672 - RR42_RS12330 0.79 -0.4 2,646,755 - -0.4 2,646,808 + +0.7 2,646,809 - -1.1 2,646,852 - -1.2
Or see this region's nucleotide sequence