Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09290

Experiment: L-Asparagine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS09290 and RR42_RS09295 are separated by 273 nucleotides RR42_RS09290: RR42_RS09290 - hypothetical protein, at 1,965,368 to 1,965,568 _RS09290 RR42_RS09295: RR42_RS09295 - phospholipase, at 1,965,842 to 1,966,546 _RS09295 Position (kb) 1965 1966Strain fitness (log2 ratio) -2 -1 0 1at 1964.410 kb on - strandat 1964.935 kb on - strandat 1964.935 kb on - strandat 1964.935 kb on - strandat 1964.945 kb on - strandat 1964.945 kb on - strandat 1965.253 kb on + strandat 1965.254 kb on - strandat 1965.256 kb on + strandat 1965.496 kb on - strand, within RR42_RS09290at 1965.787 kb on - strandat 1965.787 kb on - strandat 1965.843 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
remove
1,964,410 - -0.9
1,964,935 - -0.1
1,964,935 - -0.4
1,964,935 - +0.5
1,964,945 - -1.0
1,964,945 - -0.6
1,965,253 + -0.5
1,965,254 - +0.3
1,965,256 + -2.5
1,965,496 - RR42_RS09290 0.64 -1.2
1,965,787 - +0.1
1,965,787 - +0.1
1,965,843 + +0.2

Or see this region's nucleotide sequence