Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06850

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06835 and RR42_RS06845 are separated by 403 nucleotidesRR42_RS06845 and RR42_RS06850 overlap by 8 nucleotides RR42_RS06835: RR42_RS06835 - recombinase RdgC, at 1,477,381 to 1,478,319 _RS06835 RR42_RS06845: RR42_RS06845 - hypothetical protein, at 1,478,723 to 1,479,019 _RS06845 RR42_RS06850: RR42_RS06850 - hypothetical protein, at 1,479,012 to 1,479,467 _RS06850 Position (kb) 1479 1480Strain fitness (log2 ratio) -1 0 1 2at 1478.023 kb on - strand, within RR42_RS06835at 1478.316 kb on - strandat 1478.316 kb on - strandat 1478.316 kb on - strandat 1478.481 kb on + strandat 1478.514 kb on + strandat 1478.515 kb on - strandat 1478.515 kb on - strandat 1478.515 kb on - strandat 1478.615 kb on + strandat 1478.616 kb on - strandat 1478.616 kb on - strandat 1478.796 kb on + strand, within RR42_RS06845at 1478.803 kb on + strand, within RR42_RS06845at 1478.804 kb on - strand, within RR42_RS06845at 1478.804 kb on - strand, within RR42_RS06845at 1478.804 kb on - strand, within RR42_RS06845at 1478.804 kb on - strand, within RR42_RS06845at 1478.804 kb on - strand, within RR42_RS06845at 1478.889 kb on - strand, within RR42_RS06845at 1479.124 kb on - strand, within RR42_RS06850at 1479.230 kb on + strand, within RR42_RS06850at 1479.342 kb on + strand, within RR42_RS06850at 1479.343 kb on - strand, within RR42_RS06850at 1479.678 kb on + strandat 1479.852 kb on + strandat 1479.853 kb on - strandat 1480.119 kb on + strandat 1480.142 kb on - strandat 1480.142 kb on - strandat 1480.142 kb on - strandat 1480.153 kb on + strandat 1480.153 kb on + strandat 1480.154 kb on - strandat 1480.173 kb on + strandat 1480.335 kb on + strandat 1480.414 kb on - strandat 1480.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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1,478,023 - RR42_RS06835 0.68 +0.0
1,478,316 - -0.5
1,478,316 - -0.4
1,478,316 - -0.4
1,478,481 + -0.2
1,478,514 + -0.8
1,478,515 - +2.4
1,478,515 - +1.2
1,478,515 - -0.7
1,478,615 + -0.7
1,478,616 - -0.1
1,478,616 - +0.3
1,478,796 + RR42_RS06845 0.25 -0.9
1,478,803 + RR42_RS06845 0.27 +0.5
1,478,804 - RR42_RS06845 0.27 -0.3
1,478,804 - RR42_RS06845 0.27 +0.2
1,478,804 - RR42_RS06845 0.27 +0.4
1,478,804 - RR42_RS06845 0.27 +1.8
1,478,804 - RR42_RS06845 0.27 -1.0
1,478,889 - RR42_RS06845 0.56 -0.1
1,479,124 - RR42_RS06850 0.25 +0.5
1,479,230 + RR42_RS06850 0.48 +0.7
1,479,342 + RR42_RS06850 0.72 +0.5
1,479,343 - RR42_RS06850 0.73 -0.1
1,479,678 + -0.5
1,479,852 + -1.2
1,479,853 - +1.5
1,480,119 + -0.8
1,480,142 - -0.1
1,480,142 - -0.2
1,480,142 - -0.8
1,480,153 + -0.2
1,480,153 + +0.2
1,480,154 - +0.6
1,480,173 + +0.4
1,480,335 + +0.8
1,480,414 - -0.5
1,480,414 - -0.2

Or see this region's nucleotide sequence