Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06310 and RR42_RS06315 are separated by 137 nucleotides RR42_RS06315 and RR42_RS06320 are separated by 25 nucleotides RR42_RS06320 and RR42_RS06325 are separated by 278 nucleotides
RR42_RS06310: RR42_RS06310 - inositol monophosphatase, at 1,385,685 to 1,386,506
_RS06310
RR42_RS06315: RR42_RS06315 - RNA methyltransferase, at 1,386,644 to 1,387,645
_RS06315
RR42_RS06320: RR42_RS06320 - 3-methylitaconate isomerase, at 1,387,671 to 1,388,177
_RS06320
RR42_RS06325: RR42_RS06325 - serine O-acetyltransferase, at 1,388,456 to 1,389,199
_RS06325
Position (kb)
1386
1387
1388 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1385.686 kb on + strand at 1386.659 kb on + strand at 1386.660 kb on - strand at 1386.661 kb on + strand at 1386.662 kb on - strand at 1386.662 kb on - strand at 1387.014 kb on + strand, within RR42_RS06315 at 1387.014 kb on + strand, within RR42_RS06315 at 1387.014 kb on + strand, within RR42_RS06315 at 1387.015 kb on - strand, within RR42_RS06315 at 1387.071 kb on - strand, within RR42_RS06315 at 1387.301 kb on + strand, within RR42_RS06315 at 1387.400 kb on + strand, within RR42_RS06315 at 1387.401 kb on - strand, within RR42_RS06315 at 1387.564 kb on + strand at 1387.565 kb on - strand at 1387.666 kb on - strand at 1387.666 kb on - strand at 1387.668 kb on + strand at 1387.668 kb on + strand at 1387.668 kb on + strand at 1387.669 kb on - strand at 1387.669 kb on - strand at 1387.669 kb on - strand at 1387.669 kb on - strand at 1387.669 kb on - strand at 1387.669 kb on - strand at 1387.669 kb on - strand at 1388.140 kb on - strand at 1388.140 kb on - strand at 1388.351 kb on + strand at 1388.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 1,385,686 + +0.3 1,386,659 + +0.2 1,386,660 - -0.7 1,386,661 + +0.9 1,386,662 - -2.0 1,386,662 - +0.3 1,387,014 + RR42_RS06315 0.37 +0.9 1,387,014 + RR42_RS06315 0.37 -0.1 1,387,014 + RR42_RS06315 0.37 +1.5 1,387,015 - RR42_RS06315 0.37 -0.1 1,387,071 - RR42_RS06315 0.43 +0.8 1,387,301 + RR42_RS06315 0.66 -1.4 1,387,400 + RR42_RS06315 0.75 -0.4 1,387,401 - RR42_RS06315 0.76 +0.5 1,387,564 + +1.9 1,387,565 - -0.3 1,387,666 - +0.4 1,387,666 - +0.0 1,387,668 + +0.2 1,387,668 + -0.1 1,387,668 + -0.1 1,387,669 - -0.7 1,387,669 - +0.7 1,387,669 - +0.5 1,387,669 - +0.2 1,387,669 - +0.5 1,387,669 - +0.2 1,387,669 - -1.4 1,388,140 - -0.5 1,388,140 - -0.0 1,388,351 + -0.3 1,388,352 - -0.2
Or see this region's nucleotide sequence