Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05120

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05115 and RR42_RS05120 are separated by 138 nucleotidesRR42_RS05120 and RR42_RS05125 are separated by 189 nucleotidesRR42_RS05125 and RR42_RS05130 overlap by 4 nucleotides RR42_RS05115: RR42_RS05115 - LysR family transcriptional regulator, at 1,129,197 to 1,130,165 _RS05115 RR42_RS05120: RR42_RS05120 - ABC transporter substrate-binding protein, at 1,130,304 to 1,131,284 _RS05120 RR42_RS05125: RR42_RS05125 - malonic semialdehyde reductase, at 1,131,474 to 1,132,058 _RS05125 RR42_RS05130: RR42_RS05130 - 2-aminomuconate deaminase, at 1,132,055 to 1,132,468 _RS05130 Position (kb) 1130 1131 1132Strain fitness (log2 ratio) -1 0 1 2at 1129.629 kb on - strand, within RR42_RS05115at 1129.888 kb on + strand, within RR42_RS05115at 1129.889 kb on - strand, within RR42_RS05115at 1130.242 kb on - strandat 1130.528 kb on + strand, within RR42_RS05120at 1130.548 kb on + strand, within RR42_RS05120at 1130.668 kb on + strand, within RR42_RS05120at 1130.809 kb on - strand, within RR42_RS05120at 1131.010 kb on + strand, within RR42_RS05120at 1131.011 kb on - strand, within RR42_RS05120at 1131.038 kb on - strand, within RR42_RS05120at 1131.674 kb on - strand, within RR42_RS05125at 1131.746 kb on - strand, within RR42_RS05125at 1131.959 kb on - strand, within RR42_RS05125at 1131.959 kb on - strand, within RR42_RS05125at 1132.128 kb on - strand, within RR42_RS05130at 1132.218 kb on + strand, within RR42_RS05130at 1132.218 kb on + strand, within RR42_RS05130at 1132.218 kb on + strand, within RR42_RS05130at 1132.219 kb on - strand, within RR42_RS05130

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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1,129,629 - RR42_RS05115 0.45 +1.1
1,129,888 + RR42_RS05115 0.71 +0.5
1,129,889 - RR42_RS05115 0.71 -0.0
1,130,242 - -0.0
1,130,528 + RR42_RS05120 0.23 -0.3
1,130,548 + RR42_RS05120 0.25 -0.3
1,130,668 + RR42_RS05120 0.37 +1.1
1,130,809 - RR42_RS05120 0.51 +0.1
1,131,010 + RR42_RS05120 0.72 +2.3
1,131,011 - RR42_RS05120 0.72 +0.9
1,131,038 - RR42_RS05120 0.75 +1.4
1,131,674 - RR42_RS05125 0.34 +1.6
1,131,746 - RR42_RS05125 0.46 +1.3
1,131,959 - RR42_RS05125 0.83 +0.6
1,131,959 - RR42_RS05125 0.83 +0.5
1,132,128 - RR42_RS05130 0.18 +1.1
1,132,218 + RR42_RS05130 0.39 +0.9
1,132,218 + RR42_RS05130 0.39 -0.2
1,132,218 + RR42_RS05130 0.39 -1.1
1,132,219 - RR42_RS05130 0.40 -0.0

Or see this region's nucleotide sequence