Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03980 and RR42_RS03985 are separated by 28 nucleotides RR42_RS03985 and RR42_RS03990 are separated by 274 nucleotides
RR42_RS03980: RR42_RS03980 - Fis family transcriptional regulator, at 877,929 to 879,251
_RS03980
RR42_RS03985: RR42_RS03985 - histidine kinase, at 879,280 to 881,196
_RS03985
RR42_RS03990: RR42_RS03990 - aspartate:proton symporter Glt <small>(from data)</small>, at 881,471 to 882,781
_RS03990
Position (kb) 879
880
881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 878.338 kb on + strand, within RR42_RS03980 at 878.339 kb on - strand, within RR42_RS03980 at 878.430 kb on - strand, within RR42_RS03980 at 879.706 kb on - strand, within RR42_RS03985 at 880.428 kb on - strand, within RR42_RS03985 at 880.649 kb on + strand, within RR42_RS03985 at 880.649 kb on + strand, within RR42_RS03985 at 880.650 kb on - strand, within RR42_RS03985 at 880.650 kb on - strand, within RR42_RS03985 at 880.650 kb on - strand, within RR42_RS03985 at 880.653 kb on - strand, within RR42_RS03985 at 880.685 kb on + strand, within RR42_RS03985 at 880.686 kb on - strand, within RR42_RS03985 at 880.686 kb on - strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.755 kb on - strand, within RR42_RS03985 at 880.856 kb on + strand, within RR42_RS03985 at 880.857 kb on - strand, within RR42_RS03985 at 880.857 kb on - strand, within RR42_RS03985 at 880.946 kb on + strand, within RR42_RS03985 at 880.947 kb on - strand, within RR42_RS03985 at 880.952 kb on + strand, within RR42_RS03985 at 880.986 kb on - strand, within RR42_RS03985 at 880.986 kb on - strand, within RR42_RS03985 at 881.039 kb on + strand at 881.040 kb on - strand at 881.040 kb on - strand at 881.040 kb on - strand at 881.272 kb on - strand at 881.272 kb on - strand at 881.296 kb on + strand at 881.296 kb on + strand at 881.297 kb on - strand at 881.297 kb on - strand at 881.297 kb on - strand at 881.298 kb on + strand at 881.325 kb on + strand at 881.326 kb on - strand at 881.388 kb on - strand at 881.389 kb on - strand at 881.473 kb on - strand at 881.473 kb on - strand at 881.473 kb on - strand at 881.847 kb on + strand, within RR42_RS03990 at 881.847 kb on + strand, within RR42_RS03990 at 881.847 kb on + strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 882.046 kb on - strand, within RR42_RS03990 at 882.090 kb on + strand, within RR42_RS03990
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 878,338 + RR42_RS03980 0.31 -1.7 878,339 - RR42_RS03980 0.31 -1.6 878,430 - RR42_RS03980 0.38 -1.2 879,706 - RR42_RS03985 0.22 -0.6 880,428 - RR42_RS03985 0.60 -1.0 880,649 + RR42_RS03985 0.71 -1.2 880,649 + RR42_RS03985 0.71 -0.9 880,650 - RR42_RS03985 0.71 -2.1 880,650 - RR42_RS03985 0.71 -0.9 880,650 - RR42_RS03985 0.71 -1.0 880,653 - RR42_RS03985 0.72 -2.1 880,685 + RR42_RS03985 0.73 -0.7 880,686 - RR42_RS03985 0.73 -0.9 880,686 - RR42_RS03985 0.73 -0.3 880,754 + RR42_RS03985 0.77 -2.1 880,754 + RR42_RS03985 0.77 -0.9 880,754 + RR42_RS03985 0.77 +2.1 880,754 + RR42_RS03985 0.77 -0.5 880,754 + RR42_RS03985 0.77 -1.5 880,755 - RR42_RS03985 0.77 -1.2 880,856 + RR42_RS03985 0.82 -1.5 880,857 - RR42_RS03985 0.82 -0.9 880,857 - RR42_RS03985 0.82 +0.1 880,946 + RR42_RS03985 0.87 -1.2 880,947 - RR42_RS03985 0.87 -2.5 880,952 + RR42_RS03985 0.87 -2.7 880,986 - RR42_RS03985 0.89 -1.5 880,986 - RR42_RS03985 0.89 -1.2 881,039 + -0.6 881,040 - -1.3 881,040 - +0.5 881,040 - -2.0 881,272 - +0.9 881,272 - -0.5 881,296 + -0.2 881,296 + -0.7 881,297 - -0.3 881,297 - -0.3 881,297 - -0.1 881,298 + -0.5 881,325 + -0.5 881,326 - -0.2 881,388 - +0.6 881,389 - -0.6 881,473 - -0.2 881,473 - +0.1 881,473 - -0.8 881,847 + RR42_RS03990 0.29 -0.5 881,847 + RR42_RS03990 0.29 -1.5 881,847 + RR42_RS03990 0.29 +2.1 881,848 - RR42_RS03990 0.29 -1.7 881,848 - RR42_RS03990 0.29 -0.3 881,848 - RR42_RS03990 0.29 -2.8 881,848 - RR42_RS03990 0.29 -1.1 881,848 - RR42_RS03990 0.29 -0.9 882,046 - RR42_RS03990 0.44 -0.3 882,090 + RR42_RS03990 0.47 -3.2
Or see this region's nucleotide sequence