Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17875 and RALBFv3_RS24300 are separated by 121 nucleotides RALBFv3_RS24300 and RALBFv3_RS17885 overlap by 4 nucleotides
RALBFv3_RS17875: RALBFv3_RS17875 - sodium:solute symporter family protein, at 515,010 to 516,440
_RS17875
RALBFv3_RS24300: RALBFv3_RS24300 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 516,562 to 518,871
_RS24300
RALBFv3_RS17885: RALBFv3_RS17885 - alcohol dehydrogenase, at 518,868 to 520,037
_RS17885
Position (kb) 516
517
518
519 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 515.581 kb on + strand, within RALBFv3_RS17875 at 515.581 kb on + strand, within RALBFv3_RS17875 at 515.581 kb on + strand, within RALBFv3_RS17875 at 515.581 kb on + strand, within RALBFv3_RS17875 at 515.582 kb on - strand, within RALBFv3_RS17875 at 515.582 kb on - strand, within RALBFv3_RS17875 at 515.902 kb on + strand, within RALBFv3_RS17875 at 516.023 kb on - strand, within RALBFv3_RS17875 at 516.052 kb on + strand, within RALBFv3_RS17875 at 516.052 kb on + strand, within RALBFv3_RS17875 at 516.052 kb on + strand, within RALBFv3_RS17875 at 516.053 kb on - strand, within RALBFv3_RS17875 at 516.053 kb on - strand, within RALBFv3_RS17875 at 516.140 kb on - strand, within RALBFv3_RS17875 at 516.268 kb on + strand, within RALBFv3_RS17875 at 516.268 kb on + strand, within RALBFv3_RS17875 at 516.268 kb on + strand, within RALBFv3_RS17875 at 516.385 kb on + strand at 516.385 kb on + strand at 516.385 kb on + strand at 516.386 kb on - strand at 516.386 kb on - strand at 516.386 kb on - strand at 516.782 kb on + strand at 516.783 kb on - strand at 516.783 kb on - strand at 517.277 kb on + strand, within RALBFv3_RS24300 at 517.277 kb on + strand, within RALBFv3_RS24300 at 517.278 kb on - strand, within RALBFv3_RS24300 at 517.278 kb on - strand, within RALBFv3_RS24300 at 517.278 kb on - strand, within RALBFv3_RS24300 at 517.279 kb on - strand, within RALBFv3_RS24300 at 517.490 kb on + strand, within RALBFv3_RS24300 at 517.491 kb on - strand, within RALBFv3_RS24300 at 517.491 kb on - strand, within RALBFv3_RS24300 at 517.577 kb on + strand, within RALBFv3_RS24300 at 517.577 kb on + strand, within RALBFv3_RS24300 at 517.577 kb on + strand, within RALBFv3_RS24300 at 517.578 kb on - strand, within RALBFv3_RS24300 at 518.887 kb on + strand at 518.887 kb on + strand at 518.887 kb on + strand at 518.888 kb on - strand at 518.888 kb on - strand at 518.888 kb on - strand at 519.335 kb on - strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.418 kb on + strand, within RALBFv3_RS17885 at 519.419 kb on - strand, within RALBFv3_RS17885 at 519.419 kb on - strand, within RALBFv3_RS17885 at 519.419 kb on - strand, within RALBFv3_RS17885
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 515,581 + RALBFv3_RS17875 0.40 +0.6 515,581 + RALBFv3_RS17875 0.40 -0.5 515,581 + RALBFv3_RS17875 0.40 -0.5 515,581 + RALBFv3_RS17875 0.40 -1.6 515,582 - RALBFv3_RS17875 0.40 -0.2 515,582 - RALBFv3_RS17875 0.40 -1.1 515,902 + RALBFv3_RS17875 0.62 -0.2 516,023 - RALBFv3_RS17875 0.71 +0.4 516,052 + RALBFv3_RS17875 0.73 -0.8 516,052 + RALBFv3_RS17875 0.73 -0.0 516,052 + RALBFv3_RS17875 0.73 -0.4 516,053 - RALBFv3_RS17875 0.73 +1.1 516,053 - RALBFv3_RS17875 0.73 -0.9 516,140 - RALBFv3_RS17875 0.79 +1.7 516,268 + RALBFv3_RS17875 0.88 -1.1 516,268 + RALBFv3_RS17875 0.88 -0.2 516,268 + RALBFv3_RS17875 0.88 -2.1 516,385 + +1.0 516,385 + +0.7 516,385 + +0.1 516,386 - -0.3 516,386 - +0.3 516,386 - +0.9 516,782 + -0.5 516,783 - -1.1 516,783 - +0.7 517,277 + RALBFv3_RS24300 0.31 +1.5 517,277 + RALBFv3_RS24300 0.31 +2.5 517,278 - RALBFv3_RS24300 0.31 +0.1 517,278 - RALBFv3_RS24300 0.31 -0.7 517,278 - RALBFv3_RS24300 0.31 +0.0 517,279 - RALBFv3_RS24300 0.31 +1.0 517,490 + RALBFv3_RS24300 0.40 +1.2 517,491 - RALBFv3_RS24300 0.40 +1.7 517,491 - RALBFv3_RS24300 0.40 +0.6 517,577 + RALBFv3_RS24300 0.44 -0.0 517,577 + RALBFv3_RS24300 0.44 -1.8 517,577 + RALBFv3_RS24300 0.44 -0.5 517,578 - RALBFv3_RS24300 0.44 -0.3 518,887 + -0.8 518,887 + -0.4 518,887 + -0.2 518,888 - -0.2 518,888 - +3.6 518,888 - -0.4 519,335 - RALBFv3_RS17885 0.40 +2.1 519,418 + RALBFv3_RS17885 0.47 +0.2 519,418 + RALBFv3_RS17885 0.47 +0.7 519,418 + RALBFv3_RS17885 0.47 +0.1 519,418 + RALBFv3_RS17885 0.47 +0.0 519,418 + RALBFv3_RS17885 0.47 +2.0 519,418 + RALBFv3_RS17885 0.47 -0.0 519,419 - RALBFv3_RS17885 0.47 -0.8 519,419 - RALBFv3_RS17885 0.47 +1.4 519,419 - RALBFv3_RS17885 0.47 -0.2
Or see this region's nucleotide sequence