Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS19115

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS19110 and RALBFv3_RS19115 overlap by 4 nucleotidesRALBFv3_RS19115 and RALBFv3_RS19120 are separated by 2 nucleotides RALBFv3_RS19110: RALBFv3_RS19110 - transferase, at 861,971 to 863,134 _RS19110 RALBFv3_RS19115: RALBFv3_RS19115 - acyltransferase, at 863,131 to 863,643 _RS19115 RALBFv3_RS19120: RALBFv3_RS19120 - dehydrogenase, at 863,646 to 865,787 _RS19120 Position (kb) 863 864Strain fitness (log2 ratio) -3 -2 -1 0 1at 862.136 kb on - strand, within RALBFv3_RS19110at 862.136 kb on - strand, within RALBFv3_RS19110at 862.557 kb on - strand, within RALBFv3_RS19110at 862.725 kb on - strand, within RALBFv3_RS19110at 862.914 kb on - strand, within RALBFv3_RS19110at 863.025 kb on - strandat 863.055 kb on - strandat 863.090 kb on + strandat 863.091 kb on - strandat 863.091 kb on - strandat 863.138 kb on - strandat 863.594 kb on - strandat 863.595 kb on + strandat 863.596 kb on - strandat 863.597 kb on - strandat 863.642 kb on - strandat 863.688 kb on - strandat 863.688 kb on - strandat 863.928 kb on + strand, within RALBFv3_RS19120at 864.517 kb on - strand, within RALBFv3_RS19120at 864.517 kb on - strand, within RALBFv3_RS19120

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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862,136 - RALBFv3_RS19110 0.14 -0.3
862,136 - RALBFv3_RS19110 0.14 -2.6
862,557 - RALBFv3_RS19110 0.50 -0.6
862,725 - RALBFv3_RS19110 0.65 +0.6
862,914 - RALBFv3_RS19110 0.81 -2.2
863,025 - +0.7
863,055 - -0.8
863,090 + +1.1
863,091 - -2.0
863,091 - -3.0
863,138 - -0.3
863,594 - -1.2
863,595 + +1.7
863,596 - -0.7
863,597 - -1.0
863,642 - -2.2
863,688 - +0.3
863,688 - -1.4
863,928 + RALBFv3_RS19120 0.13 -0.4
864,517 - RALBFv3_RS19120 0.41 -2.6
864,517 - RALBFv3_RS19120 0.41 +0.7

Or see this region's nucleotide sequence