Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18320 and RALBFv3_RS18325 are separated by 133 nucleotides RALBFv3_RS18325 and RALBFv3_RS18330 are separated by 271 nucleotides
RALBFv3_RS18320: RALBFv3_RS18320 - LuxR family transcriptional regulator, at 635,317 to 636,357
_RS18320
RALBFv3_RS18325: RALBFv3_RS18325 - DNA-binding response regulator, at 636,491 to 637,045
_RS18325
RALBFv3_RS18330: RALBFv3_RS18330 - amino acid ABC transporter substrate-binding protein, at 637,317 to 638,207
_RS18330
Position (kb) 636
637
638 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 635.637 kb on + strand, within RALBFv3_RS18320 at 635.669 kb on - strand, within RALBFv3_RS18320 at 635.677 kb on + strand, within RALBFv3_RS18320 at 635.677 kb on + strand, within RALBFv3_RS18320 at 635.678 kb on - strand, within RALBFv3_RS18320 at 635.695 kb on + strand, within RALBFv3_RS18320 at 635.696 kb on - strand, within RALBFv3_RS18320 at 635.696 kb on - strand, within RALBFv3_RS18320 at 635.696 kb on - strand, within RALBFv3_RS18320 at 635.728 kb on + strand, within RALBFv3_RS18320 at 636.231 kb on + strand, within RALBFv3_RS18320 at 636.232 kb on - strand, within RALBFv3_RS18320 at 636.238 kb on + strand, within RALBFv3_RS18320 at 636.238 kb on + strand, within RALBFv3_RS18320 at 636.238 kb on + strand, within RALBFv3_RS18320 at 636.239 kb on - strand, within RALBFv3_RS18320 at 636.355 kb on + strand at 636.355 kb on + strand at 636.356 kb on - strand at 636.414 kb on - strand at 636.455 kb on + strand at 636.723 kb on - strand, within RALBFv3_RS18325 at 636.723 kb on - strand, within RALBFv3_RS18325 at 636.998 kb on + strand at 636.998 kb on + strand at 636.998 kb on + strand at 637.007 kb on + strand at 637.007 kb on + strand at 637.007 kb on + strand at 637.007 kb on + strand at 637.007 kb on + strand at 637.008 kb on - strand at 637.008 kb on - strand at 637.008 kb on - strand at 637.245 kb on - strand at 637.275 kb on - strand at 637.275 kb on - strand at 637.462 kb on - strand, within RALBFv3_RS18330 at 637.566 kb on + strand, within RALBFv3_RS18330 at 637.567 kb on - strand, within RALBFv3_RS18330 at 637.689 kb on + strand, within RALBFv3_RS18330 at 637.689 kb on + strand, within RALBFv3_RS18330 at 637.690 kb on - strand, within RALBFv3_RS18330 at 637.690 kb on - strand, within RALBFv3_RS18330 at 637.812 kb on - strand, within RALBFv3_RS18330 at 637.962 kb on + strand, within RALBFv3_RS18330 at 637.998 kb on + strand, within RALBFv3_RS18330
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 635,637 + RALBFv3_RS18320 0.31 +1.2 635,669 - RALBFv3_RS18320 0.34 +0.5 635,677 + RALBFv3_RS18320 0.35 -0.8 635,677 + RALBFv3_RS18320 0.35 +0.4 635,678 - RALBFv3_RS18320 0.35 +0.8 635,695 + RALBFv3_RS18320 0.36 -2.0 635,696 - RALBFv3_RS18320 0.36 -0.9 635,696 - RALBFv3_RS18320 0.36 -0.6 635,696 - RALBFv3_RS18320 0.36 -0.2 635,728 + RALBFv3_RS18320 0.39 +0.0 636,231 + RALBFv3_RS18320 0.88 -0.2 636,232 - RALBFv3_RS18320 0.88 -0.0 636,238 + RALBFv3_RS18320 0.88 -1.1 636,238 + RALBFv3_RS18320 0.88 +1.8 636,238 + RALBFv3_RS18320 0.88 +1.2 636,239 - RALBFv3_RS18320 0.89 -0.7 636,355 + -1.9 636,355 + -0.2 636,356 - -0.9 636,414 - +0.2 636,455 + -0.2 636,723 - RALBFv3_RS18325 0.42 -0.0 636,723 - RALBFv3_RS18325 0.42 +3.1 636,998 + +1.1 636,998 + +0.7 636,998 + -0.1 637,007 + -1.1 637,007 + -2.1 637,007 + +2.1 637,007 + +0.4 637,007 + -0.5 637,008 - -0.1 637,008 - +0.3 637,008 - -1.6 637,245 - +0.3 637,275 - +0.8 637,275 - +0.9 637,462 - RALBFv3_RS18330 0.16 -0.3 637,566 + RALBFv3_RS18330 0.28 -0.4 637,567 - RALBFv3_RS18330 0.28 -1.7 637,689 + RALBFv3_RS18330 0.42 +0.4 637,689 + RALBFv3_RS18330 0.42 -0.3 637,690 - RALBFv3_RS18330 0.42 -2.0 637,690 - RALBFv3_RS18330 0.42 -0.1 637,812 - RALBFv3_RS18330 0.56 -0.5 637,962 + RALBFv3_RS18330 0.72 -1.4 637,998 + RALBFv3_RS18330 0.76 +0.8
Or see this region's nucleotide sequence