Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS24355 and RALBFv3_RS18205 are separated by 28 nucleotides RALBFv3_RS18205 and RALBFv3_RS18210 are separated by 336 nucleotides RALBFv3_RS18210 and RALBFv3_RS18215 are separated by 103 nucleotides RALBFv3_RS18215 and RALBFv3_RS18220 are separated by 273 nucleotides
RALBFv3_RS24355: RALBFv3_RS24355 - hypothetical protein, at 612,116 to 612,429
_RS24355
RALBFv3_RS18205: RALBFv3_RS18205 - hypothetical protein, at 612,458 to 612,697
_RS18205
RALBFv3_RS18210: RALBFv3_RS18210 - hypothetical protein, at 613,034 to 613,285
_RS18210
RALBFv3_RS18215: RALBFv3_RS18215 - acid phosphatase, at 613,389 to 615,545
_RS18215
RALBFv3_RS18220: RALBFv3_RS18220 - cytochrome-c peroxidase, at 615,819 to 617,162
_RS18220
Position (kb) 613
614
615
616 Strain fitness (log2 ratio) -2
-1
0
1
2 at 612.522 kb on + strand, within RALBFv3_RS18205 at 612.522 kb on + strand, within RALBFv3_RS18205 at 612.523 kb on - strand, within RALBFv3_RS18205 at 612.579 kb on + strand, within RALBFv3_RS18205 at 612.579 kb on + strand, within RALBFv3_RS18205 at 612.580 kb on - strand, within RALBFv3_RS18205 at 612.580 kb on - strand, within RALBFv3_RS18205 at 612.580 kb on - strand, within RALBFv3_RS18205 at 612.926 kb on + strand at 612.927 kb on - strand at 613.033 kb on + strand at 613.034 kb on - strand at 613.045 kb on + strand at 613.046 kb on - strand at 613.046 kb on - strand at 613.049 kb on + strand at 613.050 kb on - strand at 613.050 kb on - strand at 613.140 kb on - strand, within RALBFv3_RS18210 at 613.284 kb on - strand at 613.540 kb on + strand at 613.541 kb on - strand at 613.541 kb on - strand at 613.649 kb on - strand, within RALBFv3_RS18215 at 613.649 kb on - strand, within RALBFv3_RS18215 at 613.669 kb on + strand, within RALBFv3_RS18215 at 613.669 kb on + strand, within RALBFv3_RS18215 at 613.669 kb on + strand, within RALBFv3_RS18215 at 613.670 kb on - strand, within RALBFv3_RS18215 at 613.801 kb on + strand, within RALBFv3_RS18215 at 613.802 kb on - strand, within RALBFv3_RS18215 at 613.859 kb on - strand, within RALBFv3_RS18215 at 613.859 kb on - strand, within RALBFv3_RS18215 at 613.921 kb on + strand, within RALBFv3_RS18215 at 613.922 kb on - strand, within RALBFv3_RS18215 at 613.924 kb on + strand, within RALBFv3_RS18215 at 613.924 kb on + strand, within RALBFv3_RS18215 at 613.924 kb on + strand, within RALBFv3_RS18215 at 613.925 kb on - strand, within RALBFv3_RS18215 at 613.969 kb on + strand, within RALBFv3_RS18215 at 614.122 kb on + strand, within RALBFv3_RS18215 at 614.194 kb on + strand, within RALBFv3_RS18215 at 614.195 kb on - strand, within RALBFv3_RS18215 at 614.242 kb on + strand, within RALBFv3_RS18215 at 614.371 kb on + strand, within RALBFv3_RS18215 at 614.372 kb on - strand, within RALBFv3_RS18215 at 614.398 kb on + strand, within RALBFv3_RS18215 at 614.399 kb on - strand, within RALBFv3_RS18215 at 614.437 kb on + strand, within RALBFv3_RS18215 at 614.438 kb on - strand, within RALBFv3_RS18215 at 614.438 kb on - strand, within RALBFv3_RS18215 at 614.439 kb on - strand, within RALBFv3_RS18215 at 614.500 kb on + strand, within RALBFv3_RS18215 at 614.501 kb on - strand, within RALBFv3_RS18215 at 614.504 kb on - strand, within RALBFv3_RS18215 at 614.584 kb on + strand, within RALBFv3_RS18215 at 614.584 kb on + strand, within RALBFv3_RS18215 at 614.585 kb on - strand, within RALBFv3_RS18215 at 614.860 kb on + strand, within RALBFv3_RS18215 at 615.320 kb on - strand, within RALBFv3_RS18215 at 615.340 kb on + strand at 615.341 kb on - strand at 615.341 kb on - strand at 615.341 kb on - strand at 615.412 kb on + strand at 615.412 kb on + strand at 615.784 kb on - strand at 615.972 kb on + strand, within RALBFv3_RS18220 at 616.119 kb on + strand, within RALBFv3_RS18220 at 616.204 kb on - strand, within RALBFv3_RS18220 at 616.287 kb on + strand, within RALBFv3_RS18220 at 616.521 kb on + strand, within RALBFv3_RS18220 at 616.522 kb on - strand, within RALBFv3_RS18220 at 616.527 kb on + strand, within RALBFv3_RS18220 at 616.539 kb on + strand, within RALBFv3_RS18220 at 616.540 kb on - strand, within RALBFv3_RS18220 at 616.540 kb on - strand, within RALBFv3_RS18220
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 612,522 + RALBFv3_RS18205 0.27 -0.6 612,522 + RALBFv3_RS18205 0.27 +1.1 612,523 - RALBFv3_RS18205 0.27 -2.3 612,579 + RALBFv3_RS18205 0.50 +1.5 612,579 + RALBFv3_RS18205 0.50 -1.4 612,580 - RALBFv3_RS18205 0.51 -0.7 612,580 - RALBFv3_RS18205 0.51 -0.1 612,580 - RALBFv3_RS18205 0.51 -0.3 612,926 + -0.2 612,927 - +0.3 613,033 + +0.4 613,034 - +0.7 613,045 + -0.2 613,046 - -0.0 613,046 - -0.3 613,049 + -1.5 613,050 - -0.8 613,050 - -0.0 613,140 - RALBFv3_RS18210 0.42 -1.4 613,284 - -0.1 613,540 + +0.3 613,541 - +0.3 613,541 - +0.7 613,649 - RALBFv3_RS18215 0.12 +0.5 613,649 - RALBFv3_RS18215 0.12 +0.2 613,669 + RALBFv3_RS18215 0.13 +0.5 613,669 + RALBFv3_RS18215 0.13 -0.3 613,669 + RALBFv3_RS18215 0.13 -0.0 613,670 - RALBFv3_RS18215 0.13 -0.7 613,801 + RALBFv3_RS18215 0.19 -1.5 613,802 - RALBFv3_RS18215 0.19 -1.0 613,859 - RALBFv3_RS18215 0.22 -1.0 613,859 - RALBFv3_RS18215 0.22 -1.0 613,921 + RALBFv3_RS18215 0.25 +0.4 613,922 - RALBFv3_RS18215 0.25 -1.1 613,924 + RALBFv3_RS18215 0.25 +0.3 613,924 + RALBFv3_RS18215 0.25 -0.5 613,924 + RALBFv3_RS18215 0.25 -0.9 613,925 - RALBFv3_RS18215 0.25 -0.9 613,969 + RALBFv3_RS18215 0.27 -0.3 614,122 + RALBFv3_RS18215 0.34 -0.4 614,194 + RALBFv3_RS18215 0.37 -1.0 614,195 - RALBFv3_RS18215 0.37 +0.4 614,242 + RALBFv3_RS18215 0.40 -0.1 614,371 + RALBFv3_RS18215 0.46 -1.9 614,372 - RALBFv3_RS18215 0.46 +2.6 614,398 + RALBFv3_RS18215 0.47 -0.8 614,399 - RALBFv3_RS18215 0.47 +0.3 614,437 + RALBFv3_RS18215 0.49 -0.5 614,438 - RALBFv3_RS18215 0.49 +0.5 614,438 - RALBFv3_RS18215 0.49 +0.6 614,439 - RALBFv3_RS18215 0.49 -1.0 614,500 + RALBFv3_RS18215 0.52 +1.6 614,501 - RALBFv3_RS18215 0.52 +0.3 614,504 - RALBFv3_RS18215 0.52 +0.0 614,584 + RALBFv3_RS18215 0.55 +1.4 614,584 + RALBFv3_RS18215 0.55 -0.3 614,585 - RALBFv3_RS18215 0.55 -0.2 614,860 + RALBFv3_RS18215 0.68 +1.2 615,320 - RALBFv3_RS18215 0.90 -1.7 615,340 + -0.4 615,341 - -0.5 615,341 - -0.7 615,341 - +0.4 615,412 + -0.2 615,412 + -0.3 615,784 - +0.1 615,972 + RALBFv3_RS18220 0.11 -0.1 616,119 + RALBFv3_RS18220 0.22 -0.4 616,204 - RALBFv3_RS18220 0.29 -0.8 616,287 + RALBFv3_RS18220 0.35 -0.0 616,521 + RALBFv3_RS18220 0.52 -1.0 616,522 - RALBFv3_RS18220 0.52 -0.8 616,527 + RALBFv3_RS18220 0.53 +0.2 616,539 + RALBFv3_RS18220 0.54 -0.8 616,540 - RALBFv3_RS18220 0.54 +0.2 616,540 - RALBFv3_RS18220 0.54 -1.0
Or see this region's nucleotide sequence