Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS24250 and RALBFv3_RS17190 are separated by 507 nucleotides RALBFv3_RS17190 and RALBFv3_RS24255 are separated by 148 nucleotides RALBFv3_RS24255 and RALBFv3_RS17195 are separated by 111 nucleotides
RALBFv3_RS24250: RALBFv3_RS24250 - protein phosphatase, at 342,383 to 343,033
_RS24250
RALBFv3_RS17190: RALBFv3_RS17190 - hypothetical protein, at 343,541 to 343,870
_RS17190
RALBFv3_RS24255: RALBFv3_RS24255 - hypothetical protein, at 344,019 to 344,411
_RS24255
RALBFv3_RS17195: RALBFv3_RS17195 - hypothetical protein, at 344,523 to 345,458
_RS17195
Position (kb) 343
344 Strain fitness (log2 ratio) -2
-1
0
1
2 at 342.551 kb on - strand, within RALBFv3_RS24250 at 342.631 kb on - strand, within RALBFv3_RS24250 at 342.677 kb on - strand, within RALBFv3_RS24250 at 342.757 kb on + strand, within RALBFv3_RS24250 at 342.758 kb on - strand, within RALBFv3_RS24250 at 342.848 kb on + strand, within RALBFv3_RS24250 at 342.848 kb on + strand, within RALBFv3_RS24250 at 342.849 kb on - strand, within RALBFv3_RS24250 at 342.860 kb on - strand, within RALBFv3_RS24250 at 342.860 kb on - strand, within RALBFv3_RS24250 at 342.860 kb on - strand, within RALBFv3_RS24250 at 342.874 kb on + strand, within RALBFv3_RS24250 at 342.957 kb on - strand, within RALBFv3_RS24250 at 342.968 kb on - strand, within RALBFv3_RS24250 at 343.091 kb on + strand at 343.091 kb on + strand at 343.206 kb on + strand at 343.207 kb on - strand at 343.238 kb on + strand at 343.239 kb on - strand at 343.273 kb on + strand at 343.275 kb on + strand at 343.275 kb on + strand at 343.275 kb on + strand at 343.275 kb on + strand at 343.275 kb on + strand at 343.275 kb on + strand at 343.275 kb on + strand at 343.275 kb on + strand at 343.275 kb on + strand at 343.276 kb on - strand at 343.276 kb on - strand at 343.276 kb on - strand at 343.276 kb on - strand at 343.276 kb on - strand at 343.276 kb on - strand at 343.323 kb on + strand at 343.323 kb on + strand at 343.323 kb on + strand at 343.323 kb on + strand at 343.324 kb on - strand at 343.462 kb on + strand at 343.463 kb on - strand at 343.543 kb on - strand at 343.543 kb on - strand at 343.669 kb on - strand, within RALBFv3_RS17190 at 343.669 kb on - strand, within RALBFv3_RS17190 at 343.669 kb on - strand, within RALBFv3_RS17190 at 343.669 kb on - strand, within RALBFv3_RS17190 at 343.669 kb on - strand, within RALBFv3_RS17190 at 343.704 kb on + strand, within RALBFv3_RS17190 at 343.704 kb on + strand, within RALBFv3_RS17190 at 343.746 kb on + strand, within RALBFv3_RS17190 at 343.746 kb on + strand, within RALBFv3_RS17190 at 343.856 kb on - strand at 343.867 kb on + strand at 343.965 kb on - strand at 343.995 kb on + strand at 344.049 kb on - strand at 344.071 kb on - strand, within RALBFv3_RS24255 at 344.325 kb on + strand, within RALBFv3_RS24255 at 344.326 kb on - strand, within RALBFv3_RS24255 at 344.326 kb on - strand, within RALBFv3_RS24255 at 344.353 kb on - strand, within RALBFv3_RS24255 at 344.509 kb on - strand at 344.509 kb on - strand at 344.525 kb on - strand at 344.525 kb on - strand at 344.525 kb on - strand at 344.525 kb on - strand at 344.525 kb on - strand at 344.525 kb on - strand at 344.525 kb on - strand at 344.593 kb on + strand at 344.593 kb on + strand at 344.593 kb on + strand at 344.594 kb on - strand at 344.594 kb on - strand at 344.594 kb on - strand at 344.594 kb on - strand at 344.594 kb on - strand at 344.641 kb on + strand, within RALBFv3_RS17195 at 344.641 kb on + strand, within RALBFv3_RS17195 at 344.642 kb on - strand, within RALBFv3_RS17195 at 344.728 kb on + strand, within RALBFv3_RS17195 at 344.729 kb on - strand, within RALBFv3_RS17195 at 344.729 kb on - strand, within RALBFv3_RS17195 at 344.729 kb on - strand, within RALBFv3_RS17195 at 344.729 kb on - strand, within RALBFv3_RS17195 at 344.732 kb on - strand, within RALBFv3_RS17195 at 344.792 kb on - strand, within RALBFv3_RS17195 at 344.810 kb on - strand, within RALBFv3_RS17195
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 342,551 - RALBFv3_RS24250 0.26 -0.5 342,631 - RALBFv3_RS24250 0.38 -0.6 342,677 - RALBFv3_RS24250 0.45 +0.1 342,757 + RALBFv3_RS24250 0.57 +0.1 342,758 - RALBFv3_RS24250 0.58 -0.9 342,848 + RALBFv3_RS24250 0.71 +2.7 342,848 + RALBFv3_RS24250 0.71 +0.9 342,849 - RALBFv3_RS24250 0.72 -0.0 342,860 - RALBFv3_RS24250 0.73 +0.8 342,860 - RALBFv3_RS24250 0.73 +0.5 342,860 - RALBFv3_RS24250 0.73 -0.3 342,874 + RALBFv3_RS24250 0.75 -0.9 342,957 - RALBFv3_RS24250 0.88 +0.6 342,968 - RALBFv3_RS24250 0.90 -0.8 343,091 + -1.0 343,091 + +0.3 343,206 + +0.6 343,207 - +0.4 343,238 + -0.6 343,239 - -0.2 343,273 + +1.2 343,275 + -0.8 343,275 + +2.6 343,275 + +0.0 343,275 + -0.6 343,275 + +0.0 343,275 + -0.3 343,275 + +1.1 343,275 + -1.8 343,275 + -0.4 343,276 - -1.1 343,276 - +0.9 343,276 - -0.4 343,276 - +0.8 343,276 - -0.9 343,276 - -0.3 343,323 + -0.7 343,323 + +0.1 343,323 + +0.2 343,323 + -0.4 343,324 - +0.6 343,462 + -1.2 343,463 - -0.2 343,543 - -1.1 343,543 - -0.3 343,669 - RALBFv3_RS17190 0.39 -0.2 343,669 - RALBFv3_RS17190 0.39 +0.5 343,669 - RALBFv3_RS17190 0.39 -0.8 343,669 - RALBFv3_RS17190 0.39 +1.8 343,669 - RALBFv3_RS17190 0.39 +0.8 343,704 + RALBFv3_RS17190 0.49 +0.4 343,704 + RALBFv3_RS17190 0.49 +1.2 343,746 + RALBFv3_RS17190 0.62 +0.6 343,746 + RALBFv3_RS17190 0.62 +0.4 343,856 - -0.3 343,867 + +0.1 343,965 - -0.1 343,995 + -0.2 344,049 - +0.3 344,071 - RALBFv3_RS24255 0.13 +0.1 344,325 + RALBFv3_RS24255 0.78 +0.8 344,326 - RALBFv3_RS24255 0.78 -1.8 344,326 - RALBFv3_RS24255 0.78 -1.6 344,353 - RALBFv3_RS24255 0.85 +0.5 344,509 - -1.0 344,509 - -0.3 344,525 - -1.1 344,525 - -2.4 344,525 - +0.0 344,525 - +1.1 344,525 - +1.3 344,525 - -1.3 344,525 - +0.2 344,593 + -0.4 344,593 + -0.8 344,593 + -0.2 344,594 - +0.3 344,594 - +1.6 344,594 - -0.1 344,594 - +0.8 344,594 - -2.1 344,641 + RALBFv3_RS17195 0.13 -0.6 344,641 + RALBFv3_RS17195 0.13 +1.2 344,642 - RALBFv3_RS17195 0.13 -0.6 344,728 + RALBFv3_RS17195 0.22 -0.4 344,729 - RALBFv3_RS17195 0.22 -1.9 344,729 - RALBFv3_RS17195 0.22 -0.2 344,729 - RALBFv3_RS17195 0.22 -0.8 344,729 - RALBFv3_RS17195 0.22 +0.0 344,732 - RALBFv3_RS17195 0.22 -1.0 344,792 - RALBFv3_RS17195 0.29 +1.2 344,810 - RALBFv3_RS17195 0.31 -2.0
Or see this region's nucleotide sequence