Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS08775 and RALBFv3_RS08780 are separated by 162 nucleotides RALBFv3_RS08780 and RALBFv3_RS08785 are separated by 21 nucleotides
RALBFv3_RS08775: RALBFv3_RS08775 - phosphate ABC transporter substrate-binding protein PstS, at 1,941,313 to 1,942,374
_RS08775
RALBFv3_RS08780: RALBFv3_RS08780 - DUF3562 domain-containing protein, at 1,942,537 to 1,942,740
_RS08780
RALBFv3_RS08785: RALBFv3_RS08785 - alpha/beta hydrolase, at 1,942,762 to 1,943,727
_RS08785
Position (kb) 1942
1943 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1941.800 kb on - strand, within RALBFv3_RS08775 at 1941.814 kb on + strand, within RALBFv3_RS08775 at 1941.961 kb on + strand, within RALBFv3_RS08775 at 1941.962 kb on - strand, within RALBFv3_RS08775 at 1941.962 kb on - strand, within RALBFv3_RS08775 at 1941.967 kb on + strand, within RALBFv3_RS08775 at 1941.967 kb on + strand, within RALBFv3_RS08775 at 1941.968 kb on - strand, within RALBFv3_RS08775 at 1941.968 kb on - strand, within RALBFv3_RS08775 at 1941.968 kb on - strand, within RALBFv3_RS08775 at 1941.968 kb on - strand, within RALBFv3_RS08775 at 1941.969 kb on - strand, within RALBFv3_RS08775 at 1942.222 kb on + strand, within RALBFv3_RS08775 at 1942.470 kb on + strand at 1942.472 kb on + strand at 1942.472 kb on + strand at 1942.473 kb on - strand at 1942.473 kb on - strand at 1942.624 kb on + strand, within RALBFv3_RS08780 at 1942.624 kb on + strand, within RALBFv3_RS08780 at 1942.624 kb on + strand, within RALBFv3_RS08780 at 1942.625 kb on - strand, within RALBFv3_RS08780 at 1942.625 kb on - strand, within RALBFv3_RS08780 at 1942.625 kb on - strand, within RALBFv3_RS08780 at 1942.673 kb on - strand, within RALBFv3_RS08780 at 1942.673 kb on - strand, within RALBFv3_RS08780 at 1942.739 kb on - strand at 1942.916 kb on + strand, within RALBFv3_RS08785 at 1942.917 kb on - strand, within RALBFv3_RS08785 at 1942.917 kb on - strand, within RALBFv3_RS08785 at 1942.925 kb on + strand, within RALBFv3_RS08785 at 1942.989 kb on + strand, within RALBFv3_RS08785 at 1942.989 kb on + strand, within RALBFv3_RS08785 at 1942.989 kb on + strand, within RALBFv3_RS08785 at 1942.990 kb on - strand, within RALBFv3_RS08785 at 1942.990 kb on - strand, within RALBFv3_RS08785 at 1943.132 kb on + strand, within RALBFv3_RS08785 at 1943.132 kb on + strand, within RALBFv3_RS08785 at 1943.133 kb on - strand, within RALBFv3_RS08785 at 1943.168 kb on + strand, within RALBFv3_RS08785 at 1943.169 kb on - strand, within RALBFv3_RS08785 at 1943.382 kb on - strand, within RALBFv3_RS08785 at 1943.695 kb on + strand at 1943.696 kb on + strand at 1943.696 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,941,800 - RALBFv3_RS08775 0.46 -1.4 1,941,814 + RALBFv3_RS08775 0.47 -0.1 1,941,961 + RALBFv3_RS08775 0.61 -0.0 1,941,962 - RALBFv3_RS08775 0.61 -0.8 1,941,962 - RALBFv3_RS08775 0.61 +1.1 1,941,967 + RALBFv3_RS08775 0.62 -0.9 1,941,967 + RALBFv3_RS08775 0.62 +1.0 1,941,968 - RALBFv3_RS08775 0.62 +0.1 1,941,968 - RALBFv3_RS08775 0.62 -0.4 1,941,968 - RALBFv3_RS08775 0.62 +0.1 1,941,968 - RALBFv3_RS08775 0.62 -0.1 1,941,969 - RALBFv3_RS08775 0.62 -1.1 1,942,222 + RALBFv3_RS08775 0.86 +1.1 1,942,470 + +0.6 1,942,472 + -1.9 1,942,472 + +3.2 1,942,473 - +0.7 1,942,473 - +1.0 1,942,624 + RALBFv3_RS08780 0.43 +1.3 1,942,624 + RALBFv3_RS08780 0.43 +0.1 1,942,624 + RALBFv3_RS08780 0.43 -1.5 1,942,625 - RALBFv3_RS08780 0.43 +1.3 1,942,625 - RALBFv3_RS08780 0.43 -1.2 1,942,625 - RALBFv3_RS08780 0.43 -2.1 1,942,673 - RALBFv3_RS08780 0.67 +0.5 1,942,673 - RALBFv3_RS08780 0.67 -0.5 1,942,739 - +1.4 1,942,916 + RALBFv3_RS08785 0.16 +0.9 1,942,917 - RALBFv3_RS08785 0.16 +0.4 1,942,917 - RALBFv3_RS08785 0.16 -0.9 1,942,925 + RALBFv3_RS08785 0.17 -0.4 1,942,989 + RALBFv3_RS08785 0.23 +1.0 1,942,989 + RALBFv3_RS08785 0.23 -0.5 1,942,989 + RALBFv3_RS08785 0.23 -0.3 1,942,990 - RALBFv3_RS08785 0.24 -1.1 1,942,990 - RALBFv3_RS08785 0.24 +0.5 1,943,132 + RALBFv3_RS08785 0.38 -0.4 1,943,132 + RALBFv3_RS08785 0.38 -1.5 1,943,133 - RALBFv3_RS08785 0.38 +0.2 1,943,168 + RALBFv3_RS08785 0.42 -1.6 1,943,169 - RALBFv3_RS08785 0.42 -1.1 1,943,382 - RALBFv3_RS08785 0.64 -1.1 1,943,695 + +0.2 1,943,696 + +1.5 1,943,696 + +0.5
Or see this region's nucleotide sequence