Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS06930 and RALBFv3_RS06935 are separated by 18 nucleotides RALBFv3_RS06935 and RALBFv3_RS06940 overlap by 4 nucleotides RALBFv3_RS06940 and RALBFv3_RS06945 are separated by 173 nucleotides
RALBFv3_RS06930: RALBFv3_RS06930 - deoxyguanosinetriphosphate triphosphohydrolase, at 1,538,153 to 1,539,316
_RS06930
RALBFv3_RS06935: RALBFv3_RS06935 - 3-dehydroquinate synthase, at 1,539,335 to 1,540,441
_RS06935
RALBFv3_RS06940: RALBFv3_RS06940 - shikimate kinase, at 1,540,438 to 1,540,977
_RS06940
RALBFv3_RS06945: RALBFv3_RS06945 - type IV pilus secretin PilQ, at 1,541,151 to 1,543,292
_RS06945
Position (kb) 1539
1540
1541 Strain fitness (log2 ratio) -2
-1
0
1 at 1538.362 kb on - strand, within RALBFv3_RS06930 at 1540.525 kb on - strand, within RALBFv3_RS06940 at 1540.525 kb on - strand, within RALBFv3_RS06940 at 1540.528 kb on - strand, within RALBFv3_RS06940 at 1541.044 kb on + strand at 1541.152 kb on + strand at 1541.311 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,538,362 - RALBFv3_RS06930 0.18 -0.4 1,540,525 - RALBFv3_RS06940 0.16 -1.6 1,540,525 - RALBFv3_RS06940 0.16 -0.9 1,540,528 - RALBFv3_RS06940 0.17 -1.8 1,541,044 + -0.3 1,541,152 + -0.6 1,541,311 + -0.7
Or see this region's nucleotide sequence