Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS06115 and RALBFv3_RS06120 are separated by 30 nucleotides RALBFv3_RS06120 and RALBFv3_RS06125 are separated by 64 nucleotides RALBFv3_RS06125 and RALBFv3_RS06130 are separated by 14 nucleotides
RALBFv3_RS06115: RALBFv3_RS06115 - MarC family protein, at 1,362,059 to 1,362,652
_RS06115
RALBFv3_RS06120: RALBFv3_RS06120 - 2-oxoglutarate-dependent dioxygenase, at 1,362,683 to 1,363,561
_RS06120
RALBFv3_RS06125: RALBFv3_RS06125 - lytic transglycosylase, at 1,363,626 to 1,364,360
_RS06125
RALBFv3_RS06130: RALBFv3_RS06130 - proline--tRNA ligase, at 1,364,375 to 1,366,099
_RS06130
Position (kb) 1363
1364
1365 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1362.643 kb on + strand at 1362.644 kb on - strand at 1362.645 kb on + strand at 1362.646 kb on - strand at 1362.646 kb on - strand at 1362.646 kb on - strand at 1362.897 kb on + strand, within RALBFv3_RS06120 at 1362.898 kb on - strand, within RALBFv3_RS06120 at 1362.972 kb on + strand, within RALBFv3_RS06120 at 1362.972 kb on + strand, within RALBFv3_RS06120 at 1363.009 kb on - strand, within RALBFv3_RS06120 at 1363.016 kb on + strand, within RALBFv3_RS06120 at 1363.017 kb on - strand, within RALBFv3_RS06120 at 1363.595 kb on + strand at 1363.595 kb on + strand at 1363.596 kb on - strand at 1363.596 kb on - strand at 1363.816 kb on + strand, within RALBFv3_RS06125 at 1363.817 kb on - strand, within RALBFv3_RS06125 at 1363.832 kb on + strand, within RALBFv3_RS06125 at 1363.833 kb on - strand, within RALBFv3_RS06125 at 1363.834 kb on + strand, within RALBFv3_RS06125 at 1363.834 kb on + strand, within RALBFv3_RS06125 at 1363.835 kb on - strand, within RALBFv3_RS06125 at 1363.835 kb on - strand, within RALBFv3_RS06125 at 1363.835 kb on - strand at 1363.836 kb on + strand, within RALBFv3_RS06125 at 1363.836 kb on + strand, within RALBFv3_RS06125 at 1363.836 kb on + strand, within RALBFv3_RS06125 at 1363.837 kb on - strand, within RALBFv3_RS06125 at 1363.861 kb on + strand, within RALBFv3_RS06125 at 1364.000 kb on - strand, within RALBFv3_RS06125 at 1364.000 kb on - strand, within RALBFv3_RS06125 at 1364.074 kb on + strand, within RALBFv3_RS06125 at 1364.074 kb on + strand, within RALBFv3_RS06125 at 1364.074 kb on + strand, within RALBFv3_RS06125 at 1364.074 kb on + strand, within RALBFv3_RS06125 at 1364.075 kb on - strand, within RALBFv3_RS06125 at 1364.077 kb on + strand, within RALBFv3_RS06125 at 1364.078 kb on - strand, within RALBFv3_RS06125 at 1364.260 kb on + strand, within RALBFv3_RS06125
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,362,643 + +0.7 1,362,644 - -0.9 1,362,645 + +0.3 1,362,646 - -2.0 1,362,646 - -0.2 1,362,646 - -0.3 1,362,897 + RALBFv3_RS06120 0.24 -1.1 1,362,898 - RALBFv3_RS06120 0.24 -0.8 1,362,972 + RALBFv3_RS06120 0.33 -0.7 1,362,972 + RALBFv3_RS06120 0.33 +0.4 1,363,009 - RALBFv3_RS06120 0.37 -1.8 1,363,016 + RALBFv3_RS06120 0.38 +0.0 1,363,017 - RALBFv3_RS06120 0.38 -0.3 1,363,595 + -0.2 1,363,595 + +0.3 1,363,596 - -0.6 1,363,596 - -0.2 1,363,816 + RALBFv3_RS06125 0.26 -1.9 1,363,817 - RALBFv3_RS06125 0.26 +0.6 1,363,832 + RALBFv3_RS06125 0.28 -0.6 1,363,833 - RALBFv3_RS06125 0.28 -1.8 1,363,834 + RALBFv3_RS06125 0.28 -0.0 1,363,834 + RALBFv3_RS06125 0.28 -0.2 1,363,835 - RALBFv3_RS06125 0.28 +0.0 1,363,835 - RALBFv3_RS06125 0.28 -0.4 1,363,835 - +3.5 1,363,836 + RALBFv3_RS06125 0.29 +1.1 1,363,836 + RALBFv3_RS06125 0.29 +0.7 1,363,836 + RALBFv3_RS06125 0.29 +0.9 1,363,837 - RALBFv3_RS06125 0.29 -0.3 1,363,861 + RALBFv3_RS06125 0.32 -1.6 1,364,000 - RALBFv3_RS06125 0.51 -0.2 1,364,000 - RALBFv3_RS06125 0.51 +0.4 1,364,074 + RALBFv3_RS06125 0.61 -0.6 1,364,074 + RALBFv3_RS06125 0.61 +1.5 1,364,074 + RALBFv3_RS06125 0.61 +0.1 1,364,074 + RALBFv3_RS06125 0.61 -0.4 1,364,075 - RALBFv3_RS06125 0.61 -0.4 1,364,077 + RALBFv3_RS06125 0.61 +0.7 1,364,078 - RALBFv3_RS06125 0.61 +0.7 1,364,260 + RALBFv3_RS06125 0.86 -0.9
Or see this region's nucleotide sequence