Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03040 and RALBFv3_RS03045 are separated by 55 nucleotides RALBFv3_RS03045 and RALBFv3_RS03050 overlap by 1 nucleotides RALBFv3_RS03050 and RALBFv3_RS03055 are separated by 344 nucleotides RALBFv3_RS03055 and RALBFv3_RS03060 overlap by 4 nucleotides
RALBFv3_RS03040: RALBFv3_RS03040 - ketol-acid reductoisomerase, at 667,889 to 668,905
_RS03040
RALBFv3_RS03045: RALBFv3_RS03045 - acetolactate synthase small subunit, at 668,961 to 669,452
_RS03045
RALBFv3_RS03050: RALBFv3_RS03050 - acetolactate synthase 3 large subunit, at 669,452 to 671,209
_RS03050
RALBFv3_RS03055: RALBFv3_RS03055 - RNA polymerase sigma factor, at 671,554 to 672,120
_RS03055
RALBFv3_RS03060: RALBFv3_RS03060 - DUF3619 domain-containing protein, at 672,117 to 672,557
_RS03060
Position (kb) 669
670
671
672 Strain fitness (log2 ratio) -1
0
1 at 668.928 kb on - strand at 669.095 kb on - strand, within RALBFv3_RS03045 at 671.358 kb on + strand at 671.454 kb on + strand at 671.553 kb on + strand at 671.553 kb on + strand at 671.905 kb on + strand, within RALBFv3_RS03055 at 671.906 kb on - strand, within RALBFv3_RS03055 at 671.906 kb on - strand, within RALBFv3_RS03055 at 672.116 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 668,928 - -0.7 669,095 - RALBFv3_RS03045 0.27 +0.8 671,358 + -1.1 671,454 + +0.5 671,553 + +1.1 671,553 + +0.1 671,905 + RALBFv3_RS03055 0.62 +0.6 671,906 - RALBFv3_RS03055 0.62 -0.8 671,906 - RALBFv3_RS03055 0.62 -0.1 672,116 + +1.2
Or see this region's nucleotide sequence