Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS03035

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS03030 and RALBFv3_RS03035 are separated by 13 nucleotidesRALBFv3_RS03035 and RALBFv3_RS03040 are separated by 155 nucleotides RALBFv3_RS03030: RALBFv3_RS03030 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 666,197 to 667,072 _RS03030 RALBFv3_RS03035: RALBFv3_RS03035 - phosphatidylserine decarboxylase family protein, at 667,086 to 667,733 _RS03035 RALBFv3_RS03040: RALBFv3_RS03040 - ketol-acid reductoisomerase, at 667,889 to 668,905 _RS03040 Position (kb) 667 668Strain fitness (log2 ratio) -1 0 1at 666.167 kb on + strandat 667.686 kb on - strandat 667.721 kb on - strandat 667.721 kb on - strandat 667.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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666,167 + -0.3
667,686 - -0.4
667,721 - +0.3
667,721 - -1.0
667,783 - -0.1

Or see this region's nucleotide sequence