Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02205 and RALBFv3_RS02210 are separated by 151 nucleotides RALBFv3_RS02210 and RALBFv3_RS02215 are separated by 139 nucleotides
RALBFv3_RS02205: RALBFv3_RS02205 - propionate--CoA ligase, at 493,130 to 495,028
_RS02205
RALBFv3_RS02210: RALBFv3_RS02210 - lytic transglycosylase, at 495,180 to 496,712
_RS02210
RALBFv3_RS02215: RALBFv3_RS02215 - hydroxyacylglutathione hydrolase, at 496,852 to 497,679
_RS02215
Position (kb) 495
496
497 Strain fitness (log2 ratio) -1
0
1
2 at 494.304 kb on + strand, within RALBFv3_RS02205 at 494.305 kb on - strand, within RALBFv3_RS02205 at 494.305 kb on - strand, within RALBFv3_RS02205 at 494.313 kb on + strand, within RALBFv3_RS02205 at 494.313 kb on + strand, within RALBFv3_RS02205 at 494.314 kb on - strand, within RALBFv3_RS02205 at 494.497 kb on - strand, within RALBFv3_RS02205 at 494.676 kb on + strand, within RALBFv3_RS02205 at 494.685 kb on - strand, within RALBFv3_RS02205 at 494.760 kb on + strand, within RALBFv3_RS02205 at 494.766 kb on + strand, within RALBFv3_RS02205 at 494.766 kb on + strand, within RALBFv3_RS02205 at 494.767 kb on - strand, within RALBFv3_RS02205 at 494.799 kb on + strand, within RALBFv3_RS02205 at 494.799 kb on + strand, within RALBFv3_RS02205 at 494.799 kb on + strand, within RALBFv3_RS02205 at 494.800 kb on - strand, within RALBFv3_RS02205 at 494.800 kb on - strand, within RALBFv3_RS02205 at 494.997 kb on + strand at 494.998 kb on - strand at 495.428 kb on - strand, within RALBFv3_RS02210 at 495.740 kb on - strand, within RALBFv3_RS02210 at 495.755 kb on - strand, within RALBFv3_RS02210 at 495.892 kb on - strand, within RALBFv3_RS02210 at 496.015 kb on + strand, within RALBFv3_RS02210 at 496.016 kb on - strand, within RALBFv3_RS02210 at 496.016 kb on - strand, within RALBFv3_RS02210 at 496.016 kb on - strand, within RALBFv3_RS02210 at 496.120 kb on + strand, within RALBFv3_RS02210 at 496.174 kb on + strand, within RALBFv3_RS02210 at 496.174 kb on + strand, within RALBFv3_RS02210 at 496.174 kb on + strand, within RALBFv3_RS02210 at 496.175 kb on - strand, within RALBFv3_RS02210 at 496.247 kb on - strand, within RALBFv3_RS02210 at 496.247 kb on - strand, within RALBFv3_RS02210 at 496.394 kb on - strand, within RALBFv3_RS02210 at 496.394 kb on - strand, within RALBFv3_RS02210 at 496.450 kb on + strand, within RALBFv3_RS02210 at 496.450 kb on + strand, within RALBFv3_RS02210 at 497.117 kb on + strand, within RALBFv3_RS02215 at 497.118 kb on - strand, within RALBFv3_RS02215 at 497.118 kb on - strand, within RALBFv3_RS02215 at 497.132 kb on + strand, within RALBFv3_RS02215 at 497.133 kb on - strand, within RALBFv3_RS02215 at 497.317 kb on + strand, within RALBFv3_RS02215 at 497.317 kb on + strand, within RALBFv3_RS02215 at 497.619 kb on + strand at 497.621 kb on + strand at 497.622 kb on - strand at 497.709 kb on + strand at 497.709 kb on + strand at 497.709 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 494,304 + RALBFv3_RS02205 0.62 +0.1 494,305 - RALBFv3_RS02205 0.62 +0.6 494,305 - RALBFv3_RS02205 0.62 +2.1 494,313 + RALBFv3_RS02205 0.62 -0.8 494,313 + RALBFv3_RS02205 0.62 +0.8 494,314 - RALBFv3_RS02205 0.62 +1.0 494,497 - RALBFv3_RS02205 0.72 +0.9 494,676 + RALBFv3_RS02205 0.81 +0.9 494,685 - RALBFv3_RS02205 0.82 +0.5 494,760 + RALBFv3_RS02205 0.86 -0.2 494,766 + RALBFv3_RS02205 0.86 +0.7 494,766 + RALBFv3_RS02205 0.86 -0.7 494,767 - RALBFv3_RS02205 0.86 -0.0 494,799 + RALBFv3_RS02205 0.88 +0.8 494,799 + RALBFv3_RS02205 0.88 -0.1 494,799 + RALBFv3_RS02205 0.88 +0.1 494,800 - RALBFv3_RS02205 0.88 -0.2 494,800 - RALBFv3_RS02205 0.88 +1.0 494,997 + -0.7 494,998 - -0.3 495,428 - RALBFv3_RS02210 0.16 -0.6 495,740 - RALBFv3_RS02210 0.37 +0.9 495,755 - RALBFv3_RS02210 0.38 -1.0 495,892 - RALBFv3_RS02210 0.46 -0.4 496,015 + RALBFv3_RS02210 0.54 -1.2 496,016 - RALBFv3_RS02210 0.55 -0.8 496,016 - RALBFv3_RS02210 0.55 -1.3 496,016 - RALBFv3_RS02210 0.55 -0.1 496,120 + RALBFv3_RS02210 0.61 -0.5 496,174 + RALBFv3_RS02210 0.65 -1.1 496,174 + RALBFv3_RS02210 0.65 -1.7 496,174 + RALBFv3_RS02210 0.65 -1.7 496,175 - RALBFv3_RS02210 0.65 +0.5 496,247 - RALBFv3_RS02210 0.70 +1.5 496,247 - RALBFv3_RS02210 0.70 -0.6 496,394 - RALBFv3_RS02210 0.79 -1.3 496,394 - RALBFv3_RS02210 0.79 -1.2 496,450 + RALBFv3_RS02210 0.83 -0.4 496,450 + RALBFv3_RS02210 0.83 -1.2 497,117 + RALBFv3_RS02215 0.32 -0.3 497,118 - RALBFv3_RS02215 0.32 +0.6 497,118 - RALBFv3_RS02215 0.32 -0.1 497,132 + RALBFv3_RS02215 0.34 +2.3 497,133 - RALBFv3_RS02215 0.34 +1.2 497,317 + RALBFv3_RS02215 0.56 +0.1 497,317 + RALBFv3_RS02215 0.56 -0.3 497,619 + -0.8 497,621 + -0.0 497,622 - -0.1 497,709 + -0.8 497,709 + +0.3 497,709 + -0.8
Or see this region's nucleotide sequence