Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01135 and RALBFv3_RS01140 are separated by 76 nucleotides RALBFv3_RS01140 and RALBFv3_RS01145 are separated by 157 nucleotides
RALBFv3_RS01135: RALBFv3_RS01135 - amino acid transporter, at 251,314 to 252,852
_RS01135
RALBFv3_RS01140: RALBFv3_RS01140 - lysine-specific permease, at 252,929 to 254,458
_RS01140
RALBFv3_RS01145: RALBFv3_RS01145 - exo-poly-galacturonase signal peptide protein, at 254,616 to 256,721
_RS01145
Position (kb) 252
253
254
255 Strain fitness (log2 ratio) -2
-1
0
1
2 at 252.074 kb on - strand, within RALBFv3_RS01135 at 252.074 kb on - strand, within RALBFv3_RS01135 at 252.074 kb on - strand, within RALBFv3_RS01135 at 252.077 kb on + strand, within RALBFv3_RS01135 at 252.112 kb on + strand, within RALBFv3_RS01135 at 252.265 kb on + strand, within RALBFv3_RS01135 at 252.265 kb on + strand, within RALBFv3_RS01135 at 252.266 kb on - strand, within RALBFv3_RS01135 at 252.286 kb on + strand, within RALBFv3_RS01135 at 252.626 kb on - strand, within RALBFv3_RS01135 at 252.676 kb on + strand, within RALBFv3_RS01135 at 252.677 kb on - strand, within RALBFv3_RS01135 at 252.928 kb on + strand at 253.100 kb on + strand, within RALBFv3_RS01140 at 253.124 kb on + strand, within RALBFv3_RS01140 at 253.125 kb on - strand, within RALBFv3_RS01140 at 253.191 kb on - strand, within RALBFv3_RS01140 at 253.191 kb on - strand, within RALBFv3_RS01140 at 253.202 kb on + strand, within RALBFv3_RS01140 at 253.203 kb on - strand, within RALBFv3_RS01140 at 253.203 kb on - strand, within RALBFv3_RS01140 at 253.241 kb on + strand, within RALBFv3_RS01140 at 253.694 kb on + strand, within RALBFv3_RS01140 at 253.694 kb on + strand, within RALBFv3_RS01140 at 253.695 kb on - strand, within RALBFv3_RS01140 at 253.695 kb on - strand, within RALBFv3_RS01140 at 253.886 kb on + strand, within RALBFv3_RS01140 at 253.887 kb on - strand, within RALBFv3_RS01140 at 254.048 kb on + strand, within RALBFv3_RS01140 at 254.118 kb on - strand, within RALBFv3_RS01140 at 254.348 kb on + strand at 254.349 kb on - strand at 254.370 kb on - strand at 254.457 kb on - strand at 254.823 kb on - strand at 254.823 kb on - strand at 254.965 kb on + strand, within RALBFv3_RS01145 at 254.966 kb on - strand, within RALBFv3_RS01145 at 255.229 kb on + strand, within RALBFv3_RS01145 at 255.250 kb on + strand, within RALBFv3_RS01145 at 255.250 kb on + strand, within RALBFv3_RS01145 at 255.274 kb on + strand, within RALBFv3_RS01145 at 255.305 kb on + strand, within RALBFv3_RS01145 at 255.306 kb on - strand, within RALBFv3_RS01145
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 252,074 - RALBFv3_RS01135 0.49 +0.6 252,074 - RALBFv3_RS01135 0.49 -0.5 252,074 - RALBFv3_RS01135 0.49 -1.2 252,077 + RALBFv3_RS01135 0.50 -0.7 252,112 + RALBFv3_RS01135 0.52 -0.4 252,265 + RALBFv3_RS01135 0.62 -0.1 252,265 + RALBFv3_RS01135 0.62 -0.9 252,266 - RALBFv3_RS01135 0.62 +0.4 252,286 + RALBFv3_RS01135 0.63 -0.3 252,626 - RALBFv3_RS01135 0.85 +0.1 252,676 + RALBFv3_RS01135 0.88 +0.8 252,677 - RALBFv3_RS01135 0.89 +0.0 252,928 + -1.1 253,100 + RALBFv3_RS01140 0.11 -0.3 253,124 + RALBFv3_RS01140 0.13 -0.2 253,125 - RALBFv3_RS01140 0.13 -0.3 253,191 - RALBFv3_RS01140 0.17 -1.5 253,191 - RALBFv3_RS01140 0.17 -0.4 253,202 + RALBFv3_RS01140 0.18 +0.8 253,203 - RALBFv3_RS01140 0.18 -0.1 253,203 - RALBFv3_RS01140 0.18 +0.4 253,241 + RALBFv3_RS01140 0.20 +0.8 253,694 + RALBFv3_RS01140 0.50 -1.7 253,694 + RALBFv3_RS01140 0.50 +0.3 253,695 - RALBFv3_RS01140 0.50 -1.0 253,695 - RALBFv3_RS01140 0.50 +1.0 253,886 + RALBFv3_RS01140 0.63 -2.0 253,887 - RALBFv3_RS01140 0.63 +0.0 254,048 + RALBFv3_RS01140 0.73 -0.4 254,118 - RALBFv3_RS01140 0.78 +0.0 254,348 + +0.7 254,349 - -0.4 254,370 - +0.1 254,457 - +0.7 254,823 - +0.4 254,823 - -1.5 254,965 + RALBFv3_RS01145 0.17 -1.5 254,966 - RALBFv3_RS01145 0.17 +1.8 255,229 + RALBFv3_RS01145 0.29 -0.2 255,250 + RALBFv3_RS01145 0.30 +0.1 255,250 + RALBFv3_RS01145 0.30 +0.7 255,274 + RALBFv3_RS01145 0.31 +0.4 255,305 + RALBFv3_RS01145 0.33 +0.4 255,306 - RALBFv3_RS01145 0.33 -0.0
Or see this region's nucleotide sequence