Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5129

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_5127 and Psyr_5128 are separated by 16 nucleotidesPsyr_5128 and Psyr_5129 are separated by 146 nucleotidesPsyr_5129 and Psyr_5130 are separated by 9 nucleotidesPsyr_5130 and Psyr_5131 are separated by 18 nucleotides Psyr_5127: Psyr_5127 - H+-transporting two-sector ATPase, A subunit, at 6,082,939 to 6,083,808 _5127 Psyr_5128: Psyr_5128 - ATP synthase I chain, at 6,083,825 to 6,084,232 _5128 Psyr_5129: Psyr_5129 - chromosome segregation DNA-binding protein, at 6,084,379 to 6,085,251 _5129 Psyr_5130: Psyr_5130 - chromosome segregation ATPase, at 6,085,261 to 6,086,052 _5130 Psyr_5131: Psyr_5131 - 16S rRNA m(7)G-527 methyltransferase, at 6,086,071 to 6,086,715 _5131 Position (kb) 6084 6085 6086Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6084.263 kb on - strandat 6084.270 kb on - strandat 6084.280 kb on - strandat 6084.309 kb on - strandat 6084.311 kb on - strandat 6084.329 kb on - strandat 6084.360 kb on - strandat 6084.360 kb on - strandat 6084.360 kb on - strandat 6084.360 kb on - strandat 6084.742 kb on + strand, within Psyr_5129at 6084.743 kb on - strand, within Psyr_5129at 6084.743 kb on - strand, within Psyr_5129at 6085.012 kb on - strand, within Psyr_5129at 6085.106 kb on + strand, within Psyr_5129at 6085.106 kb on + strand, within Psyr_5129at 6085.106 kb on + strand, within Psyr_5129at 6085.107 kb on - strand, within Psyr_5129at 6085.107 kb on - strand, within Psyr_5129at 6085.107 kb on - strand, within Psyr_5129at 6085.262 kb on + strandat 6085.262 kb on + strandat 6085.328 kb on + strandat 6085.358 kb on + strand, within Psyr_5130at 6085.427 kb on + strand, within Psyr_5130at 6085.427 kb on + strand, within Psyr_5130at 6085.428 kb on - strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.496 kb on + strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.497 kb on - strand, within Psyr_5130at 6085.598 kb on + strand, within Psyr_5130at 6085.599 kb on - strand, within Psyr_5130at 6085.617 kb on + strand, within Psyr_5130at 6085.621 kb on + strand, within Psyr_5130at 6085.621 kb on + strand, within Psyr_5130at 6085.622 kb on - strand, within Psyr_5130at 6085.622 kb on - strand, within Psyr_5130at 6085.691 kb on + strand, within Psyr_5130at 6085.691 kb on + strand, within Psyr_5130at 6085.691 kb on + strand, within Psyr_5130at 6085.697 kb on + strand, within Psyr_5130at 6085.698 kb on - strand, within Psyr_5130at 6086.041 kb on + strandat 6086.042 kb on - strandat 6086.046 kb on + strandat 6086.089 kb on + strandat 6086.090 kb on - strandat 6086.171 kb on - strand, within Psyr_5131at 6086.217 kb on + strand, within Psyr_5131at 6086.217 kb on + strand, within Psyr_5131at 6086.217 kb on + strand, within Psyr_5131at 6086.217 kb on + strand, within Psyr_5131at 6086.217 kb on + strand, within Psyr_5131at 6086.218 kb on - strand, within Psyr_5131

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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6,084,263 - -0.8
6,084,270 - -0.1
6,084,280 - +0.2
6,084,309 - +0.3
6,084,311 - -0.0
6,084,329 - -0.4
6,084,360 - -1.4
6,084,360 - +0.0
6,084,360 - +0.5
6,084,360 - +0.2
6,084,742 + Psyr_5129 0.42 -0.8
6,084,743 - Psyr_5129 0.42 +0.8
6,084,743 - Psyr_5129 0.42 -1.0
6,085,012 - Psyr_5129 0.73 -0.5
6,085,106 + Psyr_5129 0.83 -1.8
6,085,106 + Psyr_5129 0.83 -1.9
6,085,106 + Psyr_5129 0.83 -1.3
6,085,107 - Psyr_5129 0.83 +0.5
6,085,107 - Psyr_5129 0.83 +1.0
6,085,107 - Psyr_5129 0.83 -0.5
6,085,262 + -0.4
6,085,262 + +0.2
6,085,328 + +1.0
6,085,358 + Psyr_5130 0.12 -0.5
6,085,427 + Psyr_5130 0.21 -1.5
6,085,427 + Psyr_5130 0.21 -0.1
6,085,428 - Psyr_5130 0.21 -1.1
6,085,496 + Psyr_5130 0.30 -2.5
6,085,496 + Psyr_5130 0.30 -0.5
6,085,496 + Psyr_5130 0.30 -0.5
6,085,496 + Psyr_5130 0.30 -0.8
6,085,496 + Psyr_5130 0.30 -1.3
6,085,496 + Psyr_5130 0.30 -1.1
6,085,496 + Psyr_5130 0.30 +0.0
6,085,496 + Psyr_5130 0.30 -1.1
6,085,496 + Psyr_5130 0.30 +0.5
6,085,496 + Psyr_5130 0.30 -0.4
6,085,496 + Psyr_5130 0.30 -0.5
6,085,496 + Psyr_5130 0.30 -0.8
6,085,496 + Psyr_5130 0.30 -1.0
6,085,496 + Psyr_5130 0.30 +0.3
6,085,496 + Psyr_5130 0.30 -0.3
6,085,496 + Psyr_5130 0.30 +0.7
6,085,496 + Psyr_5130 0.30 -3.0
6,085,497 - Psyr_5130 0.30 +0.6
6,085,497 - Psyr_5130 0.30 +0.0
6,085,497 - Psyr_5130 0.30 -1.3
6,085,497 - Psyr_5130 0.30 +0.8
6,085,497 - Psyr_5130 0.30 -2.7
6,085,497 - Psyr_5130 0.30 +0.3
6,085,497 - Psyr_5130 0.30 -1.5
6,085,497 - Psyr_5130 0.30 +0.3
6,085,497 - Psyr_5130 0.30 +0.5
6,085,497 - Psyr_5130 0.30 +3.0
6,085,497 - Psyr_5130 0.30 -0.8
6,085,497 - Psyr_5130 0.30 -1.8
6,085,497 - Psyr_5130 0.30 -0.1
6,085,497 - Psyr_5130 0.30 -2.7
6,085,497 - Psyr_5130 0.30 +0.5
6,085,497 - Psyr_5130 0.30 +0.7
6,085,497 - Psyr_5130 0.30 -1.5
6,085,497 - Psyr_5130 0.30 -1.8
6,085,598 + Psyr_5130 0.43 -1.8
6,085,599 - Psyr_5130 0.43 +0.5
6,085,617 + Psyr_5130 0.45 -0.8
6,085,621 + Psyr_5130 0.45 -2.0
6,085,621 + Psyr_5130 0.45 -1.8
6,085,622 - Psyr_5130 0.46 +3.6
6,085,622 - Psyr_5130 0.46 -0.5
6,085,691 + Psyr_5130 0.54 -2.1
6,085,691 + Psyr_5130 0.54 +0.0
6,085,691 + Psyr_5130 0.54 -1.4
6,085,697 + Psyr_5130 0.55 +0.0
6,085,698 - Psyr_5130 0.55 +0.4
6,086,041 + -0.3
6,086,042 - -2.0
6,086,046 + -0.3
6,086,089 + +0.0
6,086,090 - -2.0
6,086,171 - Psyr_5131 0.16 +1.0
6,086,217 + Psyr_5131 0.23 +0.7
6,086,217 + Psyr_5131 0.23 -0.5
6,086,217 + Psyr_5131 0.23 +0.0
6,086,217 + Psyr_5131 0.23 +1.8
6,086,217 + Psyr_5131 0.23 +0.6
6,086,218 - Psyr_5131 0.23 +0.3

Or see this region's nucleotide sequence