Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5094

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
6,046,323	-		Psyr_5093	0.73	+0.5
6,046,323	-		Psyr_5093	0.73	+0.3
6,046,399	+		Psyr_5093	0.76	+1.0
6,046,399	+		Psyr_5093	0.76	+0.1
6,046,399	+		Psyr_5093	0.76	-0.2
6,046,399	+		Psyr_5093	0.76	+0.3
6,046,399	+		Psyr_5093	0.76	+0.0
6,046,399	+		Psyr_5093	0.76	-0.5
6,046,399	+		Psyr_5093	0.76	+0.0
6,046,399	+		Psyr_5093	0.76	+0.4
6,046,399	+		Psyr_5093	0.76	-0.5
6,046,399	+		Psyr_5093	0.76	+0.1
6,046,400	-		Psyr_5093	0.76	+0.1
6,046,400	-		Psyr_5093	0.76	+0.0
6,046,400	-		Psyr_5093	0.76	+0.9
6,046,400	-		Psyr_5093	0.76	-1.0
6,046,400	-		Psyr_5093	0.76	+0.7
6,046,400	-		Psyr_5093	0.76	-1.8
6,046,400	-		Psyr_5093	0.76	-1.0
6,046,402	+		Psyr_5093	0.76	+1.6
6,046,402	+		Psyr_5093	0.76	-0.8
6,046,402	+		Psyr_5093	0.76	-1.1
6,046,402	+		Psyr_5093	0.76	+0.3
6,046,402	+		Psyr_5093	0.76	-0.8
6,046,402	+		Psyr_5093	0.76	+0.6
6,046,402	+		Psyr_5093	0.76	-0.1
6,046,402	+		Psyr_5093	0.76	+1.9
6,046,402	+		Psyr_5093	0.76	+0.6
6,046,402	+		Psyr_5093	0.76	-0.2
6,046,402	+		Psyr_5093	0.76	+0.5
6,046,403	-		Psyr_5093	0.76	+0.2
6,046,403	-		Psyr_5093	0.76	-0.5
6,046,403	-		Psyr_5093	0.76	+0.4
6,046,403	-		Psyr_5093	0.76	+0.0
6,046,403	-		Psyr_5093	0.76	-1.5
6,046,403	-		Psyr_5093	0.76	+0.3
6,046,403	-		Psyr_5093	0.76	-0.5
6,046,403	-		Psyr_5093	0.76	-0.5
6,046,403	-		Psyr_5093	0.76	-1.0
6,046,403	-		Psyr_5093	0.76	-0.9
6,046,403	-		Psyr_5093	0.76	+0.9
6,046,406	+		Psyr_5093	0.77	+0.9
6,046,407	-		Psyr_5093	0.77	+0.0
6,046,478	+		Psyr_5093	0.80	-0.8
6,046,479	-		Psyr_5093	0.80	+0.0
6,046,574	+		Psyr_5093	0.85	+0.5
6,046,575	-		Psyr_5093	0.85	-0.1
6,046,575	-		Psyr_5093	0.85	-0.4
6,046,645	-		Psyr_5093	0.88	-0.1
6,046,645	-		Psyr_5093	0.88	+0.1
6,046,708	+				+2.0
6,046,708	+				+0.9
6,046,812	+				-1.0
6,046,812	+				+0.3
6,046,813	-				-0.4
6,046,855	+				+0.1
6,046,855	+				+1.4
6,046,855	+				-1.2
6,046,855	+				+0.6
6,046,855	+				+0.8
6,046,855	+				+0.2
6,046,855	+				+0.5
6,046,855	+				+0.7
6,046,856	-				-2.7
6,046,856	-				+0.7
6,046,859	+				+1.0
6,046,859	+				-0.3
6,046,860	-				+0.0
6,046,880	+				-1.4
6,046,880	+				-1.4
6,046,881	-				+0.2
6,046,894	+				+0.1
6,046,894	+				-0.8
6,046,898	+				-0.1
6,046,899	-				+0.0
6,046,945	+				-0.0
6,046,945	+				-0.7
6,046,948	+				-3.4
6,046,948	+				-0.3
6,046,949	-				+1.0
6,046,949	-				-0.4
6,046,959	+				-0.6
6,046,959	+				-0.1
6,046,959	+				-0.7
6,046,959	+				+1.0
6,046,959	+				+2.0
6,046,960	-				-0.3
6,046,960	-				+0.4
6,047,048	+				+0.2
6,047,048	+				+1.9
6,047,048	+				+0.6
6,047,048	+				+0.0
6,047,049	-				-0.8
6,047,049	-				-1.1
6,047,051	-				-0.2
6,047,051	-				+0.4
6,047,051	-				+0.6
6,047,068	-				-0.3
6,047,140	+				+0.2
6,047,140	+				-1.1
6,047,140	+				+1.6
6,047,140	+				-1.8
6,047,141	-				+0.2
6,047,141	-				+0.5
6,047,141	-				-0.7
6,047,141	-				-0.4
6,047,141	-				-0.7
6,047,141	-				+0.8
6,047,141	-				-1.5
6,047,141	-				+0.4
6,047,173	-				+1.3
6,047,226	-				-2.3
6,047,226	-				+0.6
6,047,226	-				-1.2
6,047,245	+				-0.7
6,047,245	+				+0.6
6,047,245	+				+0.9
6,047,246	-				-1.1
6,047,276	+				-0.8
6,047,276	+				+0.4
6,047,276	+				-0.3
6,047,276	+				-0.1
6,047,277	-				+1.3
6,047,277	-				-0.5
6,047,277	-				+0.8
6,047,277	-				-1.2
6,047,277	-				-0.3
6,047,286	-				-1.5
6,047,389	+		Psyr_5094	0.36	+0.0
6,047,389	+		Psyr_5094	0.36	+0.0
6,047,389	+		Psyr_5094	0.36	-1.8
6,047,390	-		Psyr_5094	0.37	-0.9
6,047,390	-		Psyr_5094	0.37	+0.1
6,047,390	-		Psyr_5094	0.37	+0.3
6,047,445	-		Psyr_5094	0.61	-2.1
6,047,466	+		Psyr_5094	0.71	+0.1
6,047,466	+		Psyr_5094	0.71	-0.8
6,047,466	+		Psyr_5094	0.71	+0.6
6,047,466	+		Psyr_5094	0.71	-0.5
6,047,466	+		Psyr_5094	0.71	-1.5
6,047,466	+		Psyr_5094	0.71	-1.8
6,047,466	+		Psyr_5094	0.71	-0.4
6,047,466	+		Psyr_5094	0.71	-0.7
6,047,466	+		Psyr_5094	0.71	-0.3
6,047,467	-		Psyr_5094	0.71	+0.5
6,047,467	-		Psyr_5094	0.71	-0.8
6,047,467	-		Psyr_5094	0.71	-0.8
6,047,467	-		Psyr_5094	0.71	-0.5
6,047,467	-		Psyr_5094	0.71	+0.8
6,047,467	-		Psyr_5094	0.71	-1.5
6,047,467	-		Psyr_5094	0.71	+1.0
6,047,467	-		Psyr_5094	0.71	-1.1
6,047,470	+		Psyr_5094	0.72	+0.8
6,047,470	+		Psyr_5094	0.72	+0.6
6,047,470	+		Psyr_5094	0.72	-3.0
6,047,470	+		Psyr_5094	0.72	-0.3
6,047,470	+		Psyr_5094	0.72	-0.5
6,047,470	+		Psyr_5094	0.72	-0.3
6,047,471	-		Psyr_5094	0.73	+0.0
6,047,471	-		Psyr_5094	0.73	-0.6
6,047,471	-		Psyr_5094	0.73	-0.5
6,047,471	-		Psyr_5094	0.73	+1.0
6,047,471	-		Psyr_5094	0.73	-0.6
6,047,471	-		Psyr_5094	0.73	-1.2
6,047,482	+		Psyr_5094	0.78	+0.5
6,047,482	+		Psyr_5094	0.78	-1.2
6,047,482	+		Psyr_5094	0.78	-1.8
6,047,483	-		Psyr_5094	0.78	+0.8
6,047,483	-		Psyr_5094	0.78	-0.7
6,047,483	-		Psyr_5094	0.78	+0.5
6,047,483	-		Psyr_5094	0.78	+1.6
6,047,483	-		Psyr_5094	0.78	+0.5
6,047,593	+				-1.4
6,047,594	-				-0.1
6,047,639	+				+0.0
6,047,639	+				-0.4
6,047,639	+				-0.2
6,047,640	-				+0.9
6,047,640	-				+0.9
6,047,640	-				-1.1
6,047,640	-				+1.8
6,047,640	-				-1.0
6,047,640	-				+0.6
6,047,640	-				-0.8
6,047,648	-				-1.5
6,047,686	+				-0.9
6,047,689	-				+0.3
6,047,748	+				-1.5
6,047,749	-				+2.6
6,047,789	-				-0.7
6,047,850	+				+1.0
6,047,968	+				-1.4
6,047,968	+				+0.1
6,047,968	+				+0.0
6,047,968	+				-1.2
6,047,968	+				-0.5
6,047,968	+				+0.5
6,047,968	+				-0.5
6,047,968	+				-1.0
6,047,968	+				-1.0
6,047,968	+				-1.3
6,047,968	+				-0.4
6,047,969	-				-0.6
6,047,969	-				+0.1
6,047,969	-				+0.5
6,047,970	+				+0.3
6,047,971	-				+0.2
6,047,986	+				+1.0
6,047,987	-				-0.7
6,047,987	-				-0.2
6,047,988	+				+0.8
6,047,988	+				-1.0
6,047,989	-				-0.7
6,047,999	+				+1.6
6,047,999	+				+0.9
6,048,184	-		Psyr_5095	0.26	-1.3
6,048,184	-		Psyr_5095	0.26	-1.1
6,048,198	+		Psyr_5095	0.27	+0.0
6,048,250	+		Psyr_5095	0.33	+0.0
6,048,251	-		Psyr_5095	0.33	+0.1
6,048,251	-		Psyr_5095	0.33	-0.9
6,048,251	-		Psyr_5095	0.33	-1.2
6,048,285	+		Psyr_5095	0.37	-0.7
6,048,285	+		Psyr_5095	0.37	+0.2
6,048,285	+		Psyr_5095	0.37	-0.9
6,048,285	+		Psyr_5095	0.37	-0.5
6,048,285	+		Psyr_5095	0.37	-0.1
6,048,285	+		Psyr_5095	0.37	+0.4
6,048,285	+		Psyr_5095	0.37	-0.5
6,048,285	+		Psyr_5095	0.37	+0.3
6,048,285	+		Psyr_5095	0.37	+0.8
6,048,285	+		Psyr_5095	0.37	-0.3
6,048,285	+		Psyr_5095	0.37	+0.0
6,048,285	+		Psyr_5095	0.37	-0.9
6,048,285	+		Psyr_5095	0.37	-0.2
6,048,286	-		Psyr_5095	0.37	+0.3
6,048,286	-		Psyr_5095	0.37	-0.8
6,048,286	-		Psyr_5095	0.37	-2.0
6,048,286	-		Psyr_5095	0.37	-1.1
6,048,286	-		Psyr_5095	0.37	+1.4
6,048,286	-		Psyr_5095	0.37	+1.0
6,048,299	+		Psyr_5095	0.39	-1.2
6,048,299	+		Psyr_5095	0.39	+0.1
6,048,301	+		Psyr_5095	0.39	-0.5
6,048,302	-		Psyr_5095	0.39	+0.1
6,048,345	+		Psyr_5095	0.44	+0.0
6,048,346	-		Psyr_5095	0.44	-0.2
6,048,355	+		Psyr_5095	0.45	-0.1
6,048,355	+		Psyr_5095	0.45	+1.0
6,048,355	+		Psyr_5095	0.45	+0.1
6,048,355	+		Psyr_5095	0.45	-0.2
6,048,355	+		Psyr_5095	0.45	-1.4
6,048,355	+		Psyr_5095	0.45	-1.1
6,048,355	+		Psyr_5095	0.45	-0.1
6,048,356	-		Psyr_5095	0.45	-1.6
6,048,356	-		Psyr_5095	0.45	+1.0
6,048,356	-		Psyr_5095	0.45	+0.2
6,048,356	-		Psyr_5095	0.45	-0.1
6,048,357	+		Psyr_5095	0.45	-0.0
6,048,364	-		Psyr_5095	0.46	-0.4
6,048,469	-		Psyr_5095	0.58	-0.5
6,048,469	-		Psyr_5095	0.58	-2.3