Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5065

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
6,007,814	+		Psyr_5064	0.47	+0.7
6,007,873	-		Psyr_5064	0.54	-0.0
6,007,873	-		Psyr_5064	0.54	-0.3
6,007,993	-		Psyr_5064	0.68	+1.2
6,007,993	-		Psyr_5064	0.68	-1.3
6,008,210	+				-0.5
6,008,210	+				+0.4
6,008,210	+				+0.3
6,008,210	+				-0.2
6,008,211	-				-1.3
6,008,211	-				-0.4
6,008,211	-				+0.6
6,008,239	+				-1.2
6,008,239	+				-0.3
6,008,239	+				+0.5
6,008,239	+				+1.2
6,008,240	-				+0.8
6,008,240	-				-0.5
6,008,320	+				+0.2
6,008,320	+				-0.0
6,008,321	-				+0.6
6,008,325	-				+0.5
6,008,325	-				-0.2
6,008,326	+				-0.8
6,008,326	+				-0.6
6,008,326	+				+0.1
6,008,327	-				-0.1
6,008,327	-				-1.5
6,008,329	+				-1.3
6,008,329	+				+0.6
6,008,329	+				+0.5
6,008,329	+				-0.2
6,008,330	-				+1.0
6,008,330	-				-1.6
6,008,330	-				-1.1
6,008,409	+				+0.4
6,008,409	+				+0.5
6,008,409	+				+0.1
6,008,415	+				-0.6
6,008,416	-				-0.8
6,008,421	-				-0.0
6,008,459	-				-0.4
6,008,464	+				-0.4
6,008,527	+				-1.0
6,008,528	-				+0.3
6,008,573	+				+0.9
6,008,573	+				+0.7
6,008,574	-				+0.5
6,008,574	-				-2.0
6,008,574	-				+0.1
6,008,574	-				-0.4
6,008,574	-				+0.0
6,008,644	-				-1.3
6,008,914	-		Psyr_5065	0.15	-0.5
6,008,959	-		Psyr_5065	0.17	-1.0
6,008,959	-		Psyr_5065	0.17	+0.0
6,009,064	+		Psyr_5065	0.22	-0.8
6,009,064	+		Psyr_5065	0.22	-1.0
6,009,065	-		Psyr_5065	0.22	-0.3
6,009,065	-		Psyr_5065	0.22	-2.1
6,009,065	-		Psyr_5065	0.22	-0.7
6,009,119	+		Psyr_5065	0.24	-1.5
6,009,119	+		Psyr_5065	0.24	+0.8
6,009,120	-		Psyr_5065	0.24	-0.3
6,009,120	-		Psyr_5065	0.24	-0.8
6,009,218	+		Psyr_5065	0.29	-0.5
6,009,278	+		Psyr_5065	0.32	-1.0
6,009,351	-		Psyr_5065	0.35	-1.5
6,009,390	-		Psyr_5065	0.37	-1.0
6,009,438	-		Psyr_5065	0.39	-2.0
6,009,438	-		Psyr_5065	0.39	+0.5
6,009,551	+		Psyr_5065	0.44	-0.7
6,009,552	-		Psyr_5065	0.44	-2.0
6,009,585	-		Psyr_5065	0.46	-1.4
6,009,704	-		Psyr_5065	0.51	-0.3
6,009,720	-		Psyr_5065	0.52	-0.8
6,009,720	-		Psyr_5065	0.52	+0.6
6,009,770	+		Psyr_5065	0.54	+0.0
6,009,770	+		Psyr_5065	0.54	-1.4
6,009,770	+		Psyr_5065	0.54	-0.4
6,009,770	+		Psyr_5065	0.54	-0.2
6,009,771	-		Psyr_5065	0.54	-0.4
6,009,771	-		Psyr_5065	0.54	-0.3
6,009,771	-		Psyr_5065	0.54	-1.0
6,010,063	+		Psyr_5065	0.68	-1.8
6,010,064	-		Psyr_5065	0.68	-1.5
6,010,064	-		Psyr_5065	0.68	+2.0
6,010,064	-		Psyr_5065	0.68	-0.5
6,010,064	-		Psyr_5065	0.68	+0.0
6,010,067	+		Psyr_5065	0.68	-1.3
6,010,067	+		Psyr_5065	0.68	-1.1
6,010,067	+		Psyr_5065	0.68	-1.5
6,010,068	-		Psyr_5065	0.68	-1.8
6,010,388	+		Psyr_5065	0.83	+0.5
6,010,389	-		Psyr_5065	0.83	-1.5
6,010,389	-		Psyr_5065	0.83	-0.5
6,010,430	+		Psyr_5065	0.84	+0.0
6,010,430	+		Psyr_5065	0.84	-2.5
6,010,430	+		Psyr_5065	0.84	+0.0
6,010,430	+		Psyr_5065	0.84	-1.0
6,010,452	-		Psyr_5065	0.85	-0.5
6,010,466	+		Psyr_5065	0.86	-0.5
6,010,466	+		Psyr_5065	0.86	-0.7
6,010,466	+		Psyr_5065	0.86	+0.0
6,010,467	-		Psyr_5065	0.86	+0.0
6,010,745	+				+2.0
6,010,767	-				-0.5
6,010,810	+				+0.1
6,010,850	-				+0.5
6,010,850	-				+1.7
6,010,850	-				+0.2
6,010,858	+				+0.4
6,010,858	+				+0.0
6,010,858	+				-0.8
6,010,858	+				-1.6
6,010,858	+				-0.4
6,010,859	-				-0.0
6,010,880	+				+0.0
6,010,880	+				+0.8
6,010,893	+				-1.5
6,010,893	+				+0.3
6,010,893	+				+0.2
6,010,893	+				+0.0
6,010,893	+				-1.6
6,010,894	-				+0.7
6,010,894	-				-0.3
6,010,894	-				+0.5
6,010,974	-				-0.2
6,010,979	+				-0.9
6,010,980	-				+0.7
6,010,993	+				-0.5
6,010,993	+				+0.7
6,010,993	+				+1.6
6,010,994	-				+0.2