Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4939 and Psyr_4940 are separated by 547 nucleotides Psyr_4940 and Psyr_4941 overlap by 4 nucleotides Psyr_4941 and Psyr_4942 are separated by 97 nucleotides
Psyr_4939: Psyr_4939 - conserved hypothetical protein, at 5,855,334 to 5,855,807
_4939
Psyr_4940: Psyr_4940 - 3'(2'),5'-bisphosphate nucleotidase, at 5,856,355 to 5,857,197
_4940
Psyr_4941: Psyr_4941 - NUDIX hydrolase, at 5,857,194 to 5,857,760
_4941
Psyr_4942: Psyr_4942 - HAD-superfamily hydrolase, subfamily IA, variant 3, at 5,857,858 to 5,858,520
_4942
Position (kb) 5856
5857
5858 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5855.517 kb on + strand, within Psyr_4939 at 5855.517 kb on + strand, within Psyr_4939 at 5855.518 kb on - strand, within Psyr_4939 at 5855.591 kb on + strand, within Psyr_4939 at 5855.592 kb on - strand, within Psyr_4939 at 5855.592 kb on - strand, within Psyr_4939 at 5855.700 kb on + strand, within Psyr_4939 at 5855.701 kb on - strand, within Psyr_4939 at 5855.868 kb on - strand at 5855.899 kb on + strand at 5855.900 kb on - strand at 5855.900 kb on - strand at 5855.900 kb on - strand at 5855.951 kb on + strand at 5856.142 kb on + strand at 5856.142 kb on + strand at 5856.142 kb on + strand at 5856.142 kb on + strand at 5856.143 kb on - strand at 5856.143 kb on - strand at 5856.143 kb on - strand at 5856.143 kb on - strand at 5856.143 kb on - strand at 5856.143 kb on - strand at 5856.143 kb on - strand at 5856.149 kb on - strand at 5856.177 kb on - strand at 5856.220 kb on + strand at 5856.321 kb on + strand at 5856.321 kb on + strand at 5856.321 kb on + strand at 5856.321 kb on + strand at 5856.322 kb on - strand at 5856.797 kb on + strand, within Psyr_4940 at 5856.798 kb on - strand, within Psyr_4940 at 5856.798 kb on - strand, within Psyr_4940 at 5856.836 kb on - strand, within Psyr_4940 at 5857.240 kb on + strand at 5857.240 kb on + strand at 5857.405 kb on + strand, within Psyr_4941 at 5857.543 kb on + strand, within Psyr_4941 at 5857.544 kb on - strand, within Psyr_4941 at 5857.564 kb on + strand, within Psyr_4941 at 5857.654 kb on + strand, within Psyr_4941 at 5857.655 kb on - strand, within Psyr_4941 at 5857.655 kb on - strand, within Psyr_4941 at 5857.655 kb on - strand, within Psyr_4941 at 5857.655 kb on - strand, within Psyr_4941 at 5857.655 kb on - strand, within Psyr_4941 at 5857.740 kb on + strand at 5857.740 kb on + strand at 5857.740 kb on + strand at 5857.740 kb on + strand at 5857.740 kb on + strand at 5857.740 kb on + strand at 5857.740 kb on + strand at 5857.740 kb on + strand at 5857.741 kb on - strand at 5857.741 kb on - strand at 5857.741 kb on - strand at 5857.741 kb on - strand at 5857.741 kb on - strand at 5857.741 kb on - strand at 5857.741 kb on - strand at 5857.741 kb on - strand at 5857.745 kb on + strand at 5857.746 kb on - strand at 5857.746 kb on - strand at 5857.746 kb on - strand at 5857.746 kb on - strand at 5857.746 kb on - strand at 5857.773 kb on + strand at 5857.773 kb on + strand at 5857.773 kb on + strand at 5857.773 kb on + strand at 5857.773 kb on + strand at 5857.773 kb on + strand at 5857.773 kb on + strand at 5857.774 kb on - strand at 5857.774 kb on - strand at 5857.774 kb on - strand at 5857.774 kb on - strand at 5857.774 kb on - strand at 5857.774 kb on - strand at 5857.774 kb on - strand at 5857.786 kb on + strand at 5857.786 kb on + strand at 5857.786 kb on + strand at 5857.786 kb on + strand at 5857.786 kb on + strand at 5857.786 kb on + strand at 5857.786 kb on + strand at 5857.786 kb on + strand at 5857.787 kb on - strand at 5857.787 kb on - strand at 5857.789 kb on + strand at 5857.789 kb on + strand at 5857.789 kb on + strand at 5857.789 kb on + strand at 5857.789 kb on + strand at 5857.789 kb on + strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.790 kb on - strand at 5857.791 kb on + strand at 5857.791 kb on + strand at 5857.791 kb on + strand at 5857.792 kb on - strand at 5857.792 kb on - strand at 5857.792 kb on - strand at 5857.792 kb on - strand at 5857.931 kb on - strand, within Psyr_4942 at 5857.931 kb on - strand, within Psyr_4942 at 5858.057 kb on - strand, within Psyr_4942
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 5,855,517 + Psyr_4939 0.39 +0.4 5,855,517 + Psyr_4939 0.39 +1.4 5,855,518 - Psyr_4939 0.39 -0.2 5,855,591 + Psyr_4939 0.54 +2.0 5,855,592 - Psyr_4939 0.54 +1.0 5,855,592 - Psyr_4939 0.54 -0.4 5,855,700 + Psyr_4939 0.77 -0.3 5,855,701 - Psyr_4939 0.77 -0.4 5,855,868 - -1.6 5,855,899 + +0.1 5,855,900 - +0.2 5,855,900 - +0.8 5,855,900 - +0.5 5,855,951 + +0.2 5,856,142 + +0.3 5,856,142 + +0.9 5,856,142 + +0.3 5,856,142 + +0.3 5,856,143 - +0.0 5,856,143 - -0.8 5,856,143 - -0.4 5,856,143 - +0.8 5,856,143 - -1.4 5,856,143 - -1.3 5,856,143 - -0.9 5,856,149 - -0.3 5,856,177 - -0.6 5,856,220 + -0.6 5,856,321 + +1.4 5,856,321 + +0.3 5,856,321 + +0.3 5,856,321 + +0.7 5,856,322 - -0.1 5,856,797 + Psyr_4940 0.52 -0.6 5,856,798 - Psyr_4940 0.53 -0.6 5,856,798 - Psyr_4940 0.53 -1.5 5,856,836 - Psyr_4940 0.57 -2.3 5,857,240 + -2.8 5,857,240 + -2.0 5,857,405 + Psyr_4941 0.37 +3.0 5,857,543 + Psyr_4941 0.62 -0.6 5,857,544 - Psyr_4941 0.62 -0.2 5,857,564 + Psyr_4941 0.65 -1.6 5,857,654 + Psyr_4941 0.81 +1.0 5,857,655 - Psyr_4941 0.81 -1.6 5,857,655 - Psyr_4941 0.81 +0.7 5,857,655 - Psyr_4941 0.81 -0.0 5,857,655 - Psyr_4941 0.81 -0.4 5,857,655 - Psyr_4941 0.81 -0.1 5,857,740 + -1.2 5,857,740 + -0.3 5,857,740 + +0.4 5,857,740 + +1.0 5,857,740 + -0.3 5,857,740 + -0.9 5,857,740 + -0.6 5,857,740 + -0.6 5,857,741 - +0.3 5,857,741 - -0.1 5,857,741 - +1.0 5,857,741 - +1.0 5,857,741 - -0.2 5,857,741 - +0.3 5,857,741 - -2.1 5,857,741 - -0.1 5,857,745 + +0.3 5,857,746 - -0.4 5,857,746 - -0.6 5,857,746 - +0.3 5,857,746 - -1.3 5,857,746 - +0.9 5,857,773 + -1.6 5,857,773 + -1.7 5,857,773 + -1.0 5,857,773 + +0.4 5,857,773 + -0.7 5,857,773 + -0.4 5,857,773 + -0.9 5,857,774 - +0.3 5,857,774 - -1.3 5,857,774 - -0.8 5,857,774 - -1.9 5,857,774 - +0.4 5,857,774 - +0.2 5,857,774 - -0.1 5,857,786 + -0.8 5,857,786 + -1.6 5,857,786 + +2.4 5,857,786 + +0.3 5,857,786 + +0.6 5,857,786 + +1.4 5,857,786 + -0.8 5,857,786 + +1.3 5,857,787 - +0.1 5,857,787 - -0.8 5,857,789 + +0.4 5,857,789 + -1.2 5,857,789 + -0.3 5,857,789 + +0.3 5,857,789 + +1.4 5,857,789 + -1.1 5,857,790 - -1.2 5,857,790 - +0.4 5,857,790 - +1.0 5,857,790 - -0.5 5,857,790 - -0.1 5,857,790 - -1.3 5,857,790 - -1.0 5,857,790 - -0.4 5,857,790 - -0.5 5,857,790 - -0.6 5,857,790 - +0.9 5,857,790 - +0.4 5,857,790 - +0.1 5,857,790 - -1.2 5,857,790 - +0.9 5,857,790 - +0.8 5,857,790 - -1.1 5,857,790 - +0.2 5,857,790 - -0.1 5,857,791 + -0.5 5,857,791 + +1.0 5,857,791 + -0.8 5,857,792 - +0.0 5,857,792 - +0.6 5,857,792 - -0.4 5,857,792 - -0.1 5,857,931 - Psyr_4942 0.11 -0.1 5,857,931 - Psyr_4942 0.11 +0.2 5,858,057 - Psyr_4942 0.30 -0.3
Or see this region's nucleotide sequence