Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4901 and Psyr_4902 overlap by 4 nucleotides Psyr_4902 and Psyr_RNA76 are separated by 101 nucleotides Psyr_RNA76 and Psyr_4903 are separated by 460 nucleotides
Psyr_4901: Psyr_4901 - A/G-specific DNA-adenine glycosylase, at 5,814,937 to 5,816,004
_4901
Psyr_4902: Psyr_4902 - Protein of unknown function DUF495, at 5,816,001 to 5,816,273
_4902
Psyr_RNA76: Psyr_RNA76 - tRNA-Phe, at 5,816,375 to 5,816,450
_RNA76
Psyr_4903: Psyr_4903 - hypothetical protein, at 5,816,911 to 5,818,032
_4903
Position (kb) 5816
5817 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5815.087 kb on + strand, within Psyr_4901 at 5815.087 kb on + strand, within Psyr_4901 at 5815.087 kb on + strand, within Psyr_4901 at 5815.088 kb on - strand, within Psyr_4901 at 5815.154 kb on + strand, within Psyr_4901 at 5815.154 kb on + strand, within Psyr_4901 at 5815.154 kb on + strand, within Psyr_4901 at 5815.154 kb on + strand, within Psyr_4901 at 5815.154 kb on + strand, within Psyr_4901 at 5815.155 kb on - strand, within Psyr_4901 at 5815.155 kb on - strand, within Psyr_4901 at 5815.155 kb on - strand, within Psyr_4901 at 5815.155 kb on - strand, within Psyr_4901 at 5815.155 kb on - strand, within Psyr_4901 at 5815.155 kb on - strand, within Psyr_4901 at 5815.155 kb on - strand, within Psyr_4901 at 5815.155 kb on - strand, within Psyr_4901 at 5815.183 kb on + strand, within Psyr_4901 at 5815.183 kb on + strand, within Psyr_4901 at 5815.183 kb on + strand, within Psyr_4901 at 5815.184 kb on - strand, within Psyr_4901 at 5815.184 kb on - strand, within Psyr_4901 at 5815.184 kb on - strand, within Psyr_4901 at 5815.474 kb on + strand, within Psyr_4901 at 5815.474 kb on + strand, within Psyr_4901 at 5815.474 kb on + strand, within Psyr_4901 at 5815.474 kb on + strand, within Psyr_4901 at 5815.474 kb on + strand, within Psyr_4901 at 5815.474 kb on + strand, within Psyr_4901 at 5815.474 kb on + strand, within Psyr_4901 at 5815.474 kb on + strand, within Psyr_4901 at 5815.475 kb on - strand, within Psyr_4901 at 5815.475 kb on - strand, within Psyr_4901 at 5815.475 kb on - strand, within Psyr_4901 at 5815.809 kb on + strand, within Psyr_4901 at 5815.810 kb on - strand, within Psyr_4901 at 5815.906 kb on + strand at 5815.906 kb on + strand at 5815.907 kb on - strand at 5815.907 kb on - strand at 5815.908 kb on + strand at 5815.908 kb on + strand at 5815.908 kb on + strand at 5815.909 kb on - strand at 5815.909 kb on - strand at 5815.979 kb on + strand at 5815.979 kb on + strand at 5815.979 kb on + strand at 5815.980 kb on - strand at 5815.980 kb on - strand at 5815.980 kb on - strand at 5815.980 kb on - strand at 5816.015 kb on - strand at 5816.029 kb on - strand, within Psyr_4902 at 5816.029 kb on - strand, within Psyr_4902 at 5816.190 kb on - strand, within Psyr_4902 at 5816.190 kb on - strand, within Psyr_4902 at 5816.190 kb on - strand, within Psyr_4902 at 5816.190 kb on - strand, within Psyr_4902 at 5816.235 kb on + strand, within Psyr_4902 at 5816.311 kb on - strand at 5816.594 kb on + strand at 5816.661 kb on + strand at 5816.661 kb on + strand at 5816.661 kb on + strand at 5816.661 kb on + strand at 5816.661 kb on + strand at 5816.661 kb on + strand at 5816.661 kb on + strand at 5816.661 kb on + strand at 5816.661 kb on + strand at 5816.662 kb on - strand at 5816.662 kb on - strand at 5816.662 kb on - strand at 5816.662 kb on - strand at 5816.662 kb on - strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.663 kb on + strand at 5816.664 kb on - strand at 5816.664 kb on - strand at 5816.664 kb on - strand at 5816.664 kb on - strand at 5816.664 kb on - strand at 5816.664 kb on - strand at 5816.706 kb on + strand at 5816.744 kb on + strand at 5816.744 kb on + strand at 5816.745 kb on - strand at 5816.745 kb on - strand at 5816.773 kb on + strand at 5816.773 kb on + strand at 5816.773 kb on + strand at 5816.773 kb on + strand at 5816.774 kb on - strand at 5816.774 kb on - strand at 5816.797 kb on - strand at 5816.812 kb on - strand at 5816.876 kb on + strand at 5816.877 kb on - strand at 5816.878 kb on + strand at 5816.878 kb on + strand at 5816.878 kb on + strand at 5816.878 kb on + strand at 5816.878 kb on + strand at 5816.879 kb on - strand at 5816.879 kb on - strand at 5816.879 kb on - strand at 5816.879 kb on - strand at 5816.879 kb on - strand at 5816.894 kb on + strand at 5816.894 kb on + strand at 5816.895 kb on - strand at 5816.964 kb on + strand at 5816.965 kb on - strand at 5816.965 kb on - strand at 5816.965 kb on - strand at 5817.041 kb on + strand, within Psyr_4903 at 5817.041 kb on + strand, within Psyr_4903 at 5817.089 kb on + strand, within Psyr_4903 at 5817.089 kb on + strand, within Psyr_4903 at 5817.090 kb on - strand, within Psyr_4903 at 5817.090 kb on - strand, within Psyr_4903 at 5817.090 kb on - strand, within Psyr_4903 at 5817.095 kb on + strand, within Psyr_4903 at 5817.148 kb on + strand, within Psyr_4903 at 5817.149 kb on - strand, within Psyr_4903 at 5817.149 kb on - strand, within Psyr_4903 at 5817.149 kb on - strand, within Psyr_4903 at 5817.149 kb on - strand, within Psyr_4903 at 5817.170 kb on + strand, within Psyr_4903 at 5817.171 kb on - strand, within Psyr_4903 at 5817.171 kb on - strand, within Psyr_4903 at 5817.171 kb on - strand, within Psyr_4903 at 5817.171 kb on - strand, within Psyr_4903 at 5817.171 kb on - strand, within Psyr_4903 at 5817.171 kb on - strand, within Psyr_4903 at 5817.183 kb on + strand, within Psyr_4903 at 5817.258 kb on + strand, within Psyr_4903 at 5817.269 kb on + strand, within Psyr_4903 at 5817.269 kb on + strand, within Psyr_4903 at 5817.270 kb on - strand, within Psyr_4903 at 5817.270 kb on - strand, within Psyr_4903
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 5,815,087 + Psyr_4901 0.14 +1.0 5,815,087 + Psyr_4901 0.14 -0.4 5,815,087 + Psyr_4901 0.14 +0.8 5,815,088 - Psyr_4901 0.14 -0.2 5,815,154 + Psyr_4901 0.20 -0.2 5,815,154 + Psyr_4901 0.20 -0.4 5,815,154 + Psyr_4901 0.20 -2.2 5,815,154 + Psyr_4901 0.20 +0.1 5,815,154 + Psyr_4901 0.20 -1.3 5,815,155 - Psyr_4901 0.20 +0.2 5,815,155 - Psyr_4901 0.20 +0.2 5,815,155 - Psyr_4901 0.20 -0.3 5,815,155 - Psyr_4901 0.20 -0.4 5,815,155 - Psyr_4901 0.20 +0.0 5,815,155 - Psyr_4901 0.20 -0.9 5,815,155 - Psyr_4901 0.20 +0.5 5,815,155 - Psyr_4901 0.20 -1.2 5,815,183 + Psyr_4901 0.23 +0.5 5,815,183 + Psyr_4901 0.23 +0.0 5,815,183 + Psyr_4901 0.23 +0.5 5,815,184 - Psyr_4901 0.23 +0.6 5,815,184 - Psyr_4901 0.23 -2.8 5,815,184 - Psyr_4901 0.23 -0.1 5,815,474 + Psyr_4901 0.50 +0.3 5,815,474 + Psyr_4901 0.50 -1.0 5,815,474 + Psyr_4901 0.50 -0.6 5,815,474 + Psyr_4901 0.50 -0.9 5,815,474 + Psyr_4901 0.50 -1.0 5,815,474 + Psyr_4901 0.50 +0.0 5,815,474 + Psyr_4901 0.50 -0.2 5,815,474 + Psyr_4901 0.50 +1.4 5,815,475 - Psyr_4901 0.50 -0.9 5,815,475 - Psyr_4901 0.50 -0.6 5,815,475 - Psyr_4901 0.50 +1.2 5,815,809 + Psyr_4901 0.82 +0.0 5,815,810 - Psyr_4901 0.82 -0.4 5,815,906 + -0.0 5,815,906 + +3.8 5,815,907 - -0.8 5,815,907 - -1.5 5,815,908 + +0.0 5,815,908 + -0.3 5,815,908 + -0.7 5,815,909 - -0.9 5,815,909 - +0.3 5,815,979 + -0.8 5,815,979 + -0.4 5,815,979 + -1.3 5,815,980 - +0.4 5,815,980 - -0.1 5,815,980 - -1.0 5,815,980 - -0.8 5,816,015 - +0.0 5,816,029 - Psyr_4902 0.10 -0.2 5,816,029 - Psyr_4902 0.10 -1.1 5,816,190 - Psyr_4902 0.69 -1.2 5,816,190 - Psyr_4902 0.69 -1.0 5,816,190 - Psyr_4902 0.69 +0.0 5,816,190 - Psyr_4902 0.69 -1.8 5,816,235 + Psyr_4902 0.86 +0.2 5,816,311 - +0.8 5,816,594 + -0.1 5,816,661 + -0.2 5,816,661 + -0.2 5,816,661 + +0.4 5,816,661 + -0.5 5,816,661 + -0.8 5,816,661 + -0.5 5,816,661 + +0.3 5,816,661 + -0.2 5,816,661 + -0.5 5,816,662 - +0.2 5,816,662 - +0.4 5,816,662 - +0.2 5,816,662 - -1.5 5,816,662 - -0.2 5,816,663 + -0.1 5,816,663 + -0.1 5,816,663 + +0.6 5,816,663 + -0.6 5,816,663 + +0.8 5,816,663 + -1.8 5,816,663 + +0.5 5,816,663 + +1.1 5,816,663 + +0.4 5,816,663 + -1.0 5,816,663 + -1.6 5,816,663 + -1.8 5,816,663 + -0.1 5,816,663 + -2.0 5,816,664 - -1.2 5,816,664 - +0.1 5,816,664 - +0.8 5,816,664 - -0.8 5,816,664 - -2.0 5,816,664 - -1.1 5,816,706 + -0.6 5,816,744 + -1.2 5,816,744 + +0.4 5,816,745 - +0.7 5,816,745 - -0.7 5,816,773 + -1.0 5,816,773 + +0.9 5,816,773 + -0.7 5,816,773 + -1.2 5,816,774 - +1.0 5,816,774 - -2.6 5,816,797 - +0.0 5,816,812 - +0.7 5,816,876 + -0.6 5,816,877 - +1.3 5,816,878 + -0.4 5,816,878 + -1.7 5,816,878 + +1.2 5,816,878 + +0.1 5,816,878 + -0.0 5,816,879 - -0.9 5,816,879 - -0.2 5,816,879 - +1.5 5,816,879 - -1.3 5,816,879 - +0.0 5,816,894 + +0.0 5,816,894 + -1.4 5,816,895 - -1.6 5,816,964 + -0.9 5,816,965 - +0.9 5,816,965 - +0.1 5,816,965 - -2.1 5,817,041 + Psyr_4903 0.12 +1.4 5,817,041 + Psyr_4903 0.12 -2.0 5,817,089 + Psyr_4903 0.16 -1.3 5,817,089 + Psyr_4903 0.16 -1.3 5,817,090 - Psyr_4903 0.16 -1.4 5,817,090 - Psyr_4903 0.16 -0.7 5,817,090 - Psyr_4903 0.16 -1.5 5,817,095 + Psyr_4903 0.16 -1.3 5,817,148 + Psyr_4903 0.21 -0.3 5,817,149 - Psyr_4903 0.21 +0.8 5,817,149 - Psyr_4903 0.21 +0.9 5,817,149 - Psyr_4903 0.21 +0.0 5,817,149 - Psyr_4903 0.21 +0.0 5,817,170 + Psyr_4903 0.23 -0.9 5,817,171 - Psyr_4903 0.23 -1.1 5,817,171 - Psyr_4903 0.23 -0.2 5,817,171 - Psyr_4903 0.23 +0.2 5,817,171 - Psyr_4903 0.23 +0.5 5,817,171 - Psyr_4903 0.23 -0.0 5,817,171 - Psyr_4903 0.23 +0.6 5,817,183 + Psyr_4903 0.24 +0.2 5,817,258 + Psyr_4903 0.31 +0.3 5,817,269 + Psyr_4903 0.32 +0.0 5,817,269 + Psyr_4903 0.32 +1.0 5,817,270 - Psyr_4903 0.32 +0.2 5,817,270 - Psyr_4903 0.32 +0.1
Or see this region's nucleotide sequence