Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4771 and Psyr_4772 are separated by 259 nucleotides Psyr_4772 and Psyr_4773 are separated by 379 nucleotides Psyr_4773 and Psyr_4774 are separated by 119 nucleotides
Psyr_4771: Psyr_4771 - Peptide methionine sulfoxide reductase, at 5,649,673 to 5,650,320
_4771
Psyr_4772: Psyr_4772 - Protein of unknown function DUF519, at 5,650,580 to 5,651,416
_4772
Psyr_4773: Psyr_4773 - Hypothetical protein, at 5,651,796 to 5,652,026
_4773
Psyr_4774: Psyr_4774 - Hypothetical protein, at 5,652,146 to 5,652,412
_4774
Position (kb) 5650
5651
5652 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5649.594 kb on + strand at 5649.594 kb on + strand at 5649.594 kb on + strand at 5649.595 kb on - strand at 5649.595 kb on - strand at 5649.595 kb on - strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.610 kb on + strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.611 kb on - strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.614 kb on + strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.615 kb on - strand at 5649.666 kb on - strand at 5649.695 kb on + strand at 5649.710 kb on + strand at 5649.710 kb on + strand at 5649.711 kb on - strand at 5649.711 kb on - strand at 5649.753 kb on + strand, within Psyr_4771 at 5649.753 kb on + strand, within Psyr_4771 at 5649.753 kb on + strand, within Psyr_4771 at 5649.753 kb on + strand, within Psyr_4771 at 5649.753 kb on + strand, within Psyr_4771 at 5649.753 kb on + strand, within Psyr_4771 at 5649.937 kb on + strand, within Psyr_4771 at 5649.937 kb on + strand, within Psyr_4771 at 5649.938 kb on - strand, within Psyr_4771 at 5649.992 kb on - strand, within Psyr_4771 at 5649.992 kb on - strand, within Psyr_4771 at 5650.108 kb on + strand, within Psyr_4771 at 5650.108 kb on + strand, within Psyr_4771 at 5650.109 kb on - strand, within Psyr_4771 at 5650.109 kb on - strand, within Psyr_4771 at 5650.243 kb on + strand, within Psyr_4771 at 5650.243 kb on + strand, within Psyr_4771 at 5650.255 kb on + strand, within Psyr_4771 at 5650.255 kb on + strand, within Psyr_4771 at 5650.255 kb on + strand, within Psyr_4771 at 5650.255 kb on + strand, within Psyr_4771 at 5650.256 kb on - strand at 5650.398 kb on + strand at 5650.398 kb on + strand at 5650.401 kb on + strand at 5650.401 kb on + strand at 5650.491 kb on + strand at 5650.492 kb on - strand at 5650.492 kb on - strand at 5650.492 kb on - strand at 5650.492 kb on - strand at 5650.492 kb on - strand at 5650.492 kb on - strand at 5650.492 kb on - strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.495 kb on + strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.496 kb on - strand at 5650.497 kb on + strand at 5650.797 kb on + strand, within Psyr_4772 at 5650.798 kb on - strand, within Psyr_4772 at 5650.798 kb on - strand, within Psyr_4772 at 5650.819 kb on + strand, within Psyr_4772 at 5651.178 kb on + strand, within Psyr_4772 at 5651.178 kb on + strand, within Psyr_4772 at 5651.179 kb on - strand, within Psyr_4772 at 5651.277 kb on + strand, within Psyr_4772 at 5651.277 kb on + strand, within Psyr_4772 at 5651.278 kb on - strand, within Psyr_4772 at 5651.397 kb on + strand at 5651.398 kb on - strand at 5651.398 kb on - strand at 5651.398 kb on - strand at 5651.409 kb on + strand at 5651.558 kb on + strand at 5651.559 kb on - strand at 5651.559 kb on - strand at 5651.559 kb on - strand at 5651.559 kb on - strand at 5651.559 kb on - strand at 5651.559 kb on - strand at 5651.579 kb on + strand at 5651.579 kb on + strand at 5651.596 kb on + strand at 5651.596 kb on + strand at 5651.597 kb on - strand at 5651.597 kb on - strand at 5651.597 kb on - strand at 5651.666 kb on + strand at 5651.666 kb on + strand at 5651.709 kb on - strand at 5651.720 kb on + strand at 5651.720 kb on + strand at 5651.721 kb on - strand at 5651.723 kb on + strand at 5651.723 kb on + strand at 5651.724 kb on - strand at 5651.724 kb on - strand at 5651.751 kb on - strand at 5651.784 kb on + strand at 5651.784 kb on + strand at 5651.785 kb on - strand at 5651.801 kb on - strand at 5652.005 kb on - strand at 5652.005 kb on - strand at 5652.054 kb on + strand at 5652.054 kb on + strand at 5652.301 kb on - strand, within Psyr_4774 at 5652.301 kb on - strand, within Psyr_4774 at 5652.301 kb on - strand, within Psyr_4774 at 5652.386 kb on + strand at 5652.386 kb on + strand at 5652.386 kb on + strand at 5652.387 kb on - strand at 5652.387 kb on - strand at 5652.387 kb on - strand at 5652.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 5,649,594 + +0.4 5,649,594 + +0.7 5,649,594 + -0.4 5,649,595 - +2.0 5,649,595 - -0.6 5,649,595 - +0.7 5,649,610 + +1.0 5,649,610 + -0.2 5,649,610 + +0.4 5,649,610 + +0.3 5,649,610 + -0.1 5,649,610 + -0.5 5,649,610 + -1.1 5,649,610 + +0.1 5,649,610 + +1.0 5,649,610 + -1.1 5,649,610 + -0.3 5,649,610 + -1.1 5,649,611 - -0.4 5,649,611 - +1.0 5,649,611 - -0.5 5,649,611 - -0.3 5,649,611 - -0.6 5,649,611 - -1.4 5,649,611 - +0.6 5,649,611 - -0.3 5,649,611 - -0.3 5,649,611 - +0.0 5,649,614 + -1.2 5,649,614 + +1.0 5,649,614 + -0.3 5,649,614 + +0.5 5,649,614 + +1.0 5,649,614 + +0.2 5,649,614 + -1.3 5,649,614 + -0.1 5,649,614 + -0.1 5,649,614 + +0.4 5,649,614 + -0.3 5,649,615 - +0.1 5,649,615 - -1.8 5,649,615 - -0.4 5,649,615 - +0.0 5,649,615 - +0.0 5,649,615 - +1.4 5,649,615 - +0.1 5,649,615 - -1.4 5,649,615 - +0.0 5,649,615 - +0.1 5,649,615 - +3.3 5,649,615 - -0.3 5,649,615 - +0.3 5,649,615 - -0.8 5,649,615 - -0.5 5,649,615 - +0.9 5,649,615 - +1.0 5,649,666 - +1.6 5,649,695 + -0.2 5,649,710 + -1.6 5,649,710 + -1.1 5,649,711 - -1.1 5,649,711 - +0.1 5,649,753 + Psyr_4771 0.12 +0.4 5,649,753 + Psyr_4771 0.12 +0.3 5,649,753 + Psyr_4771 0.12 -1.6 5,649,753 + Psyr_4771 0.12 +0.3 5,649,753 + Psyr_4771 0.12 -0.4 5,649,753 + Psyr_4771 0.12 +0.6 5,649,937 + Psyr_4771 0.41 -0.2 5,649,937 + Psyr_4771 0.41 +0.0 5,649,938 - Psyr_4771 0.41 -0.4 5,649,992 - Psyr_4771 0.49 +0.6 5,649,992 - Psyr_4771 0.49 +0.4 5,650,108 + Psyr_4771 0.67 -0.8 5,650,108 + Psyr_4771 0.67 +0.0 5,650,109 - Psyr_4771 0.67 -1.0 5,650,109 - Psyr_4771 0.67 +0.2 5,650,243 + Psyr_4771 0.88 -0.9 5,650,243 + Psyr_4771 0.88 -0.1 5,650,255 + Psyr_4771 0.90 -0.2 5,650,255 + Psyr_4771 0.90 -0.5 5,650,255 + Psyr_4771 0.90 -0.2 5,650,255 + Psyr_4771 0.90 -1.0 5,650,256 - -1.8 5,650,398 + -0.3 5,650,398 + +0.0 5,650,401 + +1.0 5,650,401 + +0.3 5,650,491 + -0.3 5,650,492 - +0.5 5,650,492 - +0.9 5,650,492 - -0.1 5,650,492 - +0.7 5,650,492 - +0.1 5,650,492 - +0.6 5,650,492 - +0.1 5,650,495 + -0.2 5,650,495 + +1.3 5,650,495 + +0.1 5,650,495 + -0.3 5,650,495 + +0.6 5,650,495 + +0.4 5,650,495 + +0.0 5,650,495 + +0.1 5,650,495 + +0.0 5,650,495 + +0.3 5,650,495 + -0.3 5,650,495 + +0.4 5,650,495 + -1.6 5,650,495 + +1.3 5,650,495 + -1.0 5,650,496 - +0.9 5,650,496 - -0.6 5,650,496 - -0.5 5,650,496 - -0.6 5,650,496 - +0.3 5,650,496 - +0.2 5,650,496 - +0.1 5,650,496 - -0.3 5,650,496 - +0.6 5,650,496 - +0.5 5,650,496 - +0.0 5,650,496 - -0.2 5,650,497 + -0.8 5,650,797 + Psyr_4772 0.26 +0.5 5,650,798 - Psyr_4772 0.26 -0.2 5,650,798 - Psyr_4772 0.26 +0.4 5,650,819 + Psyr_4772 0.29 +0.4 5,651,178 + Psyr_4772 0.71 -0.0 5,651,178 + Psyr_4772 0.71 +0.0 5,651,179 - Psyr_4772 0.72 -0.4 5,651,277 + Psyr_4772 0.83 +0.7 5,651,277 + Psyr_4772 0.83 -1.0 5,651,278 - Psyr_4772 0.83 +0.3 5,651,397 + -0.3 5,651,398 - +0.6 5,651,398 - -0.3 5,651,398 - -0.1 5,651,409 + -0.1 5,651,558 + +0.0 5,651,559 - +0.3 5,651,559 - +0.0 5,651,559 - -0.6 5,651,559 - -1.3 5,651,559 - -0.8 5,651,559 - +1.2 5,651,579 + -1.6 5,651,579 + +0.0 5,651,596 + +0.6 5,651,596 + +0.3 5,651,597 - -2.3 5,651,597 - -0.4 5,651,597 - +1.5 5,651,666 + -0.8 5,651,666 + +0.2 5,651,709 - -0.6 5,651,720 + +0.2 5,651,720 + -1.6 5,651,721 - +0.0 5,651,723 + +0.4 5,651,723 + +2.6 5,651,724 - +0.0 5,651,724 - -0.5 5,651,751 - -0.1 5,651,784 + -0.6 5,651,784 + -0.0 5,651,785 - +0.8 5,651,801 - +0.0 5,652,005 - -2.4 5,652,005 - -1.0 5,652,054 + -0.4 5,652,054 + +1.8 5,652,301 - Psyr_4774 0.58 +1.0 5,652,301 - Psyr_4774 0.58 -0.1 5,652,301 - Psyr_4774 0.58 +0.1 5,652,386 + -0.1 5,652,386 + +0.7 5,652,386 + +0.1 5,652,387 - -0.4 5,652,387 - +0.0 5,652,387 - +0.6 5,652,411 - +1.3
Or see this region's nucleotide sequence