Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4738 and Psyr_4739 are separated by 49 nucleotides Psyr_4739 and Psyr_4740 are separated by 10 nucleotides Psyr_4740 and Psyr_4741 are separated by 51 nucleotides Psyr_4741 and Psyr_4742 are separated by 114 nucleotides Psyr_4742 and Psyr_4743 are separated by 80 nucleotides
Psyr_4738: Psyr_4738 - conserved hypothetical protein, at 5,617,553 to 5,618,611
_4738
Psyr_4739: Psyr_4739 - tRNA (guanine-N(7)-)-methyltransferase, at 5,618,661 to 5,619,395
_4739
Psyr_4740: Psyr_4740 - thiazole-phosphate synthase, at 5,619,406 to 5,620,200
_4740
Psyr_4741: Psyr_4741 - sulfur carrier protein ThiS, at 5,620,252 to 5,620,452
_4741
Psyr_4742: Psyr_4742 - Protein of unknown function DUF423, at 5,620,567 to 5,620,947
_4742
Psyr_4743: Psyr_4743 - Glycosyl transferase, family 51, at 5,621,028 to 5,621,738
_4743
Position (kb) 5619
5620
5621 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5618.427 kb on - strand, within Psyr_4738 at 5618.427 kb on - strand, within Psyr_4738 at 5618.466 kb on + strand, within Psyr_4738 at 5618.467 kb on - strand, within Psyr_4738 at 5618.467 kb on - strand, within Psyr_4738 at 5618.495 kb on + strand, within Psyr_4738 at 5618.495 kb on + strand, within Psyr_4738 at 5618.495 kb on + strand, within Psyr_4738 at 5618.495 kb on + strand, within Psyr_4738 at 5618.495 kb on + strand, within Psyr_4738 at 5618.495 kb on + strand, within Psyr_4738 at 5618.495 kb on + strand, within Psyr_4738 at 5618.495 kb on + strand, within Psyr_4738 at 5618.495 kb on + strand, within Psyr_4738 at 5618.495 kb on + strand, within Psyr_4738 at 5618.495 kb on + strand, within Psyr_4738 at 5618.495 kb on + strand, within Psyr_4738 at 5618.495 kb on + strand, within Psyr_4738 at 5618.496 kb on - strand, within Psyr_4738 at 5618.496 kb on - strand, within Psyr_4738 at 5618.496 kb on - strand, within Psyr_4738 at 5618.496 kb on - strand, within Psyr_4738 at 5618.496 kb on - strand, within Psyr_4738 at 5618.496 kb on - strand, within Psyr_4738 at 5618.496 kb on - strand, within Psyr_4738 at 5618.496 kb on - strand, within Psyr_4738 at 5618.496 kb on - strand, within Psyr_4738 at 5618.496 kb on - strand, within Psyr_4738 at 5618.496 kb on - strand, within Psyr_4738 at 5618.762 kb on - strand, within Psyr_4739 at 5618.821 kb on + strand, within Psyr_4739 at 5618.821 kb on + strand, within Psyr_4739 at 5618.821 kb on + strand, within Psyr_4739 at 5618.821 kb on + strand, within Psyr_4739 at 5618.821 kb on + strand, within Psyr_4739 at 5618.821 kb on + strand, within Psyr_4739 at 5618.821 kb on + strand, within Psyr_4739 at 5618.821 kb on + strand, within Psyr_4739 at 5618.821 kb on + strand, within Psyr_4739 at 5618.822 kb on - strand, within Psyr_4739 at 5618.822 kb on - strand, within Psyr_4739 at 5618.822 kb on - strand, within Psyr_4739 at 5618.822 kb on - strand, within Psyr_4739 at 5618.822 kb on - strand, within Psyr_4739 at 5618.822 kb on - strand, within Psyr_4739 at 5618.822 kb on - strand, within Psyr_4739 at 5618.822 kb on - strand, within Psyr_4739 at 5618.822 kb on - strand, within Psyr_4739 at 5618.822 kb on - strand, within Psyr_4739 at 5618.822 kb on - strand, within Psyr_4739 at 5619.060 kb on + strand, within Psyr_4739 at 5619.061 kb on - strand, within Psyr_4739 at 5619.247 kb on + strand, within Psyr_4739 at 5619.247 kb on + strand, within Psyr_4739 at 5619.247 kb on + strand, within Psyr_4739 at 5619.248 kb on - strand, within Psyr_4739 at 5619.248 kb on - strand, within Psyr_4739 at 5619.248 kb on - strand, within Psyr_4739 at 5619.248 kb on - strand, within Psyr_4739 at 5619.248 kb on - strand, within Psyr_4739 at 5619.248 kb on - strand, within Psyr_4739 at 5619.407 kb on + strand at 5619.407 kb on + strand at 5619.408 kb on - strand at 5619.408 kb on - strand at 5619.408 kb on - strand at 5619.408 kb on - strand at 5619.408 kb on - strand at 5619.408 kb on - strand at 5619.408 kb on - strand at 5619.408 kb on - strand at 5619.446 kb on + strand at 5619.447 kb on - strand at 5619.476 kb on + strand at 5619.612 kb on + strand, within Psyr_4740 at 5619.675 kb on - strand, within Psyr_4740 at 5619.782 kb on + strand, within Psyr_4740 at 5619.782 kb on + strand, within Psyr_4740 at 5619.782 kb on + strand, within Psyr_4740 at 5619.783 kb on - strand, within Psyr_4740 at 5619.783 kb on - strand, within Psyr_4740 at 5619.783 kb on - strand, within Psyr_4740 at 5619.976 kb on + strand, within Psyr_4740 at 5619.976 kb on + strand, within Psyr_4740 at 5620.118 kb on + strand, within Psyr_4740 at 5620.118 kb on + strand, within Psyr_4740 at 5620.118 kb on + strand, within Psyr_4740 at 5620.118 kb on + strand, within Psyr_4740 at 5620.118 kb on + strand, within Psyr_4740 at 5620.118 kb on + strand, within Psyr_4740 at 5620.118 kb on + strand, within Psyr_4740 at 5620.119 kb on - strand, within Psyr_4740 at 5620.119 kb on - strand, within Psyr_4740 at 5620.119 kb on - strand, within Psyr_4740 at 5620.119 kb on - strand, within Psyr_4740 at 5620.132 kb on + strand at 5620.213 kb on + strand at 5620.253 kb on + strand at 5620.253 kb on + strand at 5620.254 kb on - strand at 5620.845 kb on - strand, within Psyr_4742 at 5620.938 kb on + strand at 5620.939 kb on - strand at 5620.989 kb on + strand at 5620.989 kb on + strand at 5620.989 kb on + strand at 5620.990 kb on - strand at 5620.990 kb on - strand at 5620.990 kb on - strand at 5620.990 kb on - strand at 5620.990 kb on - strand at 5620.990 kb on - strand at 5620.992 kb on - strand at 5621.027 kb on + strand at 5621.027 kb on + strand at 5621.027 kb on + strand at 5621.028 kb on - strand at 5621.028 kb on - strand at 5621.028 kb on - strand at 5621.028 kb on - strand at 5621.028 kb on - strand at 5621.039 kb on + strand at 5621.039 kb on + strand at 5621.040 kb on - strand at 5621.040 kb on - strand at 5621.040 kb on - strand at 5621.040 kb on - strand at 5621.155 kb on + strand, within Psyr_4743 at 5621.155 kb on + strand, within Psyr_4743 at 5621.155 kb on + strand, within Psyr_4743 at 5621.155 kb on + strand, within Psyr_4743 at 5621.156 kb on - strand, within Psyr_4743 at 5621.156 kb on - strand, within Psyr_4743 at 5621.156 kb on - strand, within Psyr_4743 at 5621.181 kb on - strand, within Psyr_4743
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 5,618,427 - Psyr_4738 0.83 +0.4 5,618,427 - Psyr_4738 0.83 +0.8 5,618,466 + Psyr_4738 0.86 -0.7 5,618,467 - Psyr_4738 0.86 -0.7 5,618,467 - Psyr_4738 0.86 -1.5 5,618,495 + Psyr_4738 0.89 -0.6 5,618,495 + Psyr_4738 0.89 -2.2 5,618,495 + Psyr_4738 0.89 +0.4 5,618,495 + Psyr_4738 0.89 +1.0 5,618,495 + Psyr_4738 0.89 -0.9 5,618,495 + Psyr_4738 0.89 +0.4 5,618,495 + Psyr_4738 0.89 -1.2 5,618,495 + Psyr_4738 0.89 +2.6 5,618,495 + Psyr_4738 0.89 -0.2 5,618,495 + Psyr_4738 0.89 -0.4 5,618,495 + Psyr_4738 0.89 -0.1 5,618,495 + Psyr_4738 0.89 +0.7 5,618,495 + Psyr_4738 0.89 -1.7 5,618,496 - Psyr_4738 0.89 +0.9 5,618,496 - Psyr_4738 0.89 -1.7 5,618,496 - Psyr_4738 0.89 +0.1 5,618,496 - Psyr_4738 0.89 +0.6 5,618,496 - Psyr_4738 0.89 -0.9 5,618,496 - Psyr_4738 0.89 +1.0 5,618,496 - Psyr_4738 0.89 -0.7 5,618,496 - Psyr_4738 0.89 +0.1 5,618,496 - Psyr_4738 0.89 +0.7 5,618,496 - Psyr_4738 0.89 +0.3 5,618,496 - Psyr_4738 0.89 +0.0 5,618,762 - Psyr_4739 0.14 -2.3 5,618,821 + Psyr_4739 0.22 -0.6 5,618,821 + Psyr_4739 0.22 +1.0 5,618,821 + Psyr_4739 0.22 -0.4 5,618,821 + Psyr_4739 0.22 +0.7 5,618,821 + Psyr_4739 0.22 -0.6 5,618,821 + Psyr_4739 0.22 +0.2 5,618,821 + Psyr_4739 0.22 -0.6 5,618,821 + Psyr_4739 0.22 -0.7 5,618,821 + Psyr_4739 0.22 -0.6 5,618,822 - Psyr_4739 0.22 -0.0 5,618,822 - Psyr_4739 0.22 -1.1 5,618,822 - Psyr_4739 0.22 -0.7 5,618,822 - Psyr_4739 0.22 +1.0 5,618,822 - Psyr_4739 0.22 -1.1 5,618,822 - Psyr_4739 0.22 -0.0 5,618,822 - Psyr_4739 0.22 +0.3 5,618,822 - Psyr_4739 0.22 -0.2 5,618,822 - Psyr_4739 0.22 -0.9 5,618,822 - Psyr_4739 0.22 -0.6 5,618,822 - Psyr_4739 0.22 +0.1 5,619,060 + Psyr_4739 0.54 +0.2 5,619,061 - Psyr_4739 0.54 +0.2 5,619,247 + Psyr_4739 0.80 -1.0 5,619,247 + Psyr_4739 0.80 +0.3 5,619,247 + Psyr_4739 0.80 -0.5 5,619,248 - Psyr_4739 0.80 +0.7 5,619,248 - Psyr_4739 0.80 +0.6 5,619,248 - Psyr_4739 0.80 -0.2 5,619,248 - Psyr_4739 0.80 -1.6 5,619,248 - Psyr_4739 0.80 +1.0 5,619,248 - Psyr_4739 0.80 -0.5 5,619,407 + -3.3 5,619,407 + +0.4 5,619,408 - +0.3 5,619,408 - +0.3 5,619,408 - -0.7 5,619,408 - +0.2 5,619,408 - -0.6 5,619,408 - +0.3 5,619,408 - -0.1 5,619,408 - -0.2 5,619,446 + -3.4 5,619,447 - -2.0 5,619,476 + +0.0 5,619,612 + Psyr_4740 0.26 -2.6 5,619,675 - Psyr_4740 0.34 -2.0 5,619,782 + Psyr_4740 0.47 +1.0 5,619,782 + Psyr_4740 0.47 -3.1 5,619,782 + Psyr_4740 0.47 -2.2 5,619,783 - Psyr_4740 0.47 -2.5 5,619,783 - Psyr_4740 0.47 -3.2 5,619,783 - Psyr_4740 0.47 -0.6 5,619,976 + Psyr_4740 0.72 -2.0 5,619,976 + Psyr_4740 0.72 -3.0 5,620,118 + Psyr_4740 0.90 -3.3 5,620,118 + Psyr_4740 0.90 -2.6 5,620,118 + Psyr_4740 0.90 -1.3 5,620,118 + Psyr_4740 0.90 -1.3 5,620,118 + Psyr_4740 0.90 -2.8 5,620,118 + Psyr_4740 0.90 -3.2 5,620,118 + Psyr_4740 0.90 -2.2 5,620,119 - Psyr_4740 0.90 -0.6 5,620,119 - Psyr_4740 0.90 -2.6 5,620,119 - Psyr_4740 0.90 -2.0 5,620,119 - Psyr_4740 0.90 -0.1 5,620,132 + -3.1 5,620,213 + -3.2 5,620,253 + -2.3 5,620,253 + -2.1 5,620,254 - +0.5 5,620,845 - Psyr_4742 0.73 -1.0 5,620,938 + -0.4 5,620,939 - +0.5 5,620,989 + -0.8 5,620,989 + -1.0 5,620,989 + +1.2 5,620,990 - -0.3 5,620,990 - -0.7 5,620,990 - -0.1 5,620,990 - -0.7 5,620,990 - -1.9 5,620,990 - -0.3 5,620,992 - +0.4 5,621,027 + +0.0 5,621,027 + +0.4 5,621,027 + +0.3 5,621,028 - +1.0 5,621,028 - -0.3 5,621,028 - +0.7 5,621,028 - +0.8 5,621,028 - -0.7 5,621,039 + +0.6 5,621,039 + -0.7 5,621,040 - -0.1 5,621,040 - -0.1 5,621,040 - -2.3 5,621,040 - +1.0 5,621,155 + Psyr_4743 0.18 -2.3 5,621,155 + Psyr_4743 0.18 +0.8 5,621,155 + Psyr_4743 0.18 -1.1 5,621,155 + Psyr_4743 0.18 -0.6 5,621,156 - Psyr_4743 0.18 +0.6 5,621,156 - Psyr_4743 0.18 -0.4 5,621,156 - Psyr_4743 0.18 +0.7 5,621,181 - Psyr_4743 0.22 +1.0
Or see this region's nucleotide sequence