Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4700 and Psyr_4701 are separated by 66 nucleotides Psyr_4701 and Psyr_4702 are separated by 231 nucleotides Psyr_4702 and Psyr_4703 overlap by 4 nucleotides Psyr_4703 and Psyr_4704 are separated by 25 nucleotides
Psyr_4700: Psyr_4700 - malate synthase, at 5,569,094 to 5,571,271
_4700
Psyr_4701: Psyr_4701 - Response regulator receiver, at 5,571,338 to 5,571,784
_4701
Psyr_4702: Psyr_4702 - Cyclic nucleotide-binding:CBS:Putative nucleotidyltransferase DUF294, at 5,572,016 to 5,573,950
_4702
Psyr_4703: Psyr_4703 - Exonuclease, at 5,573,947 to 5,574,660
_4703
Psyr_4704: Psyr_4704 - conserved hypothetical protein, at 5,574,686 to 5,574,988
_4704
Position (kb) 5572
5573
5574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5571.269 kb on + strand at 5571.386 kb on - strand, within Psyr_4701 at 5571.808 kb on + strand at 5571.808 kb on + strand at 5571.823 kb on + strand at 5571.902 kb on - strand at 5571.902 kb on - strand at 5571.902 kb on - strand at 5571.902 kb on - strand at 5571.940 kb on + strand at 5571.940 kb on + strand at 5571.941 kb on - strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.947 kb on + strand at 5571.948 kb on - strand at 5571.948 kb on - strand at 5571.948 kb on - strand at 5571.948 kb on - strand at 5571.948 kb on - strand at 5571.948 kb on - strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.071 kb on + strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.072 kb on - strand at 5572.139 kb on + strand at 5572.140 kb on - strand at 5572.170 kb on - strand at 5572.223 kb on + strand, within Psyr_4702 at 5572.223 kb on + strand, within Psyr_4702 at 5572.223 kb on + strand, within Psyr_4702 at 5572.223 kb on + strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.224 kb on - strand, within Psyr_4702 at 5572.532 kb on + strand, within Psyr_4702 at 5572.639 kb on - strand, within Psyr_4702 at 5572.639 kb on - strand, within Psyr_4702 at 5573.038 kb on - strand, within Psyr_4702 at 5573.073 kb on + strand, within Psyr_4702 at 5573.177 kb on - strand, within Psyr_4702 at 5573.266 kb on + strand, within Psyr_4702 at 5573.267 kb on - strand, within Psyr_4702 at 5573.267 kb on - strand, within Psyr_4702 at 5573.380 kb on + strand, within Psyr_4702 at 5573.419 kb on + strand, within Psyr_4702 at 5573.420 kb on - strand, within Psyr_4702 at 5573.420 kb on - strand, within Psyr_4702 at 5573.420 kb on - strand, within Psyr_4702 at 5573.423 kb on + strand, within Psyr_4702 at 5573.423 kb on + strand, within Psyr_4702 at 5573.423 kb on + strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.424 kb on - strand, within Psyr_4702 at 5573.771 kb on + strand at 5573.771 kb on + strand at 5573.835 kb on - strand at 5573.835 kb on - strand at 5573.946 kb on + strand at 5573.946 kb on + strand at 5573.946 kb on + strand at 5573.946 kb on + strand at 5573.947 kb on - strand at 5573.947 kb on - strand at 5573.947 kb on - strand at 5574.019 kb on - strand, within Psyr_4703 at 5574.846 kb on + strand, within Psyr_4704
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 5,571,269 + -0.9 5,571,386 - Psyr_4701 0.11 -0.2 5,571,808 + +0.3 5,571,808 + -0.9 5,571,823 + +3.0 5,571,902 - +1.3 5,571,902 - +1.0 5,571,902 - +0.2 5,571,902 - -0.1 5,571,940 + +0.1 5,571,940 + -0.4 5,571,941 - +0.4 5,571,947 + +0.6 5,571,947 + +0.6 5,571,947 + -0.2 5,571,947 + -0.2 5,571,947 + -0.0 5,571,947 + +1.6 5,571,947 + +1.0 5,571,948 - +0.8 5,571,948 - -0.6 5,571,948 - +0.6 5,571,948 - -0.0 5,571,948 - -0.6 5,571,948 - -1.3 5,572,071 + +0.7 5,572,071 + +1.5 5,572,071 + -0.0 5,572,071 + +1.1 5,572,071 + +0.8 5,572,072 - -0.2 5,572,072 - -0.8 5,572,072 - +1.4 5,572,072 - -0.2 5,572,072 - +0.2 5,572,072 - -0.5 5,572,072 - -1.7 5,572,072 - +0.9 5,572,072 - -1.2 5,572,072 - -0.3 5,572,072 - +0.6 5,572,072 - -0.5 5,572,139 + +1.5 5,572,140 - -0.1 5,572,170 - +0.5 5,572,223 + Psyr_4702 0.11 +0.2 5,572,223 + Psyr_4702 0.11 -0.7 5,572,223 + Psyr_4702 0.11 -0.9 5,572,223 + Psyr_4702 0.11 -0.2 5,572,224 - Psyr_4702 0.11 -0.2 5,572,224 - Psyr_4702 0.11 -0.0 5,572,224 - Psyr_4702 0.11 +0.2 5,572,224 - Psyr_4702 0.11 -0.3 5,572,224 - Psyr_4702 0.11 -0.0 5,572,224 - Psyr_4702 0.11 -1.0 5,572,224 - Psyr_4702 0.11 -0.6 5,572,532 + Psyr_4702 0.27 +1.1 5,572,639 - Psyr_4702 0.32 -0.0 5,572,639 - Psyr_4702 0.32 -0.8 5,573,038 - Psyr_4702 0.53 +1.7 5,573,073 + Psyr_4702 0.55 -0.8 5,573,177 - Psyr_4702 0.60 -0.3 5,573,266 + Psyr_4702 0.65 +0.6 5,573,267 - Psyr_4702 0.65 -0.0 5,573,267 - Psyr_4702 0.65 -1.2 5,573,380 + Psyr_4702 0.70 -3.1 5,573,419 + Psyr_4702 0.73 -1.3 5,573,420 - Psyr_4702 0.73 -0.7 5,573,420 - Psyr_4702 0.73 +0.4 5,573,420 - Psyr_4702 0.73 -0.2 5,573,423 + Psyr_4702 0.73 -1.0 5,573,423 + Psyr_4702 0.73 -1.6 5,573,423 + Psyr_4702 0.73 -0.4 5,573,424 - Psyr_4702 0.73 -0.1 5,573,424 - Psyr_4702 0.73 -0.3 5,573,424 - Psyr_4702 0.73 -0.4 5,573,424 - Psyr_4702 0.73 +0.2 5,573,424 - Psyr_4702 0.73 +1.0 5,573,424 - Psyr_4702 0.73 -0.8 5,573,424 - Psyr_4702 0.73 -0.8 5,573,424 - Psyr_4702 0.73 +0.6 5,573,771 + -1.0 5,573,771 + +1.0 5,573,835 - -0.1 5,573,835 - -0.6 5,573,946 + +0.7 5,573,946 + +1.4 5,573,946 + -1.0 5,573,946 + -0.5 5,573,947 - +0.1 5,573,947 - +0.8 5,573,947 - -0.5 5,574,019 - Psyr_4703 0.10 -0.3 5,574,846 + Psyr_4704 0.53 -1.8
Or see this region's nucleotide sequence