Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4696 and Psyr_4697 are separated by 192 nucleotides Psyr_4697 and Psyr_4698 are separated by 530 nucleotides
Psyr_4696: Psyr_4696 - transcriptional regulator, LacI family, at 5,564,427 to 5,565,446
_4696
Psyr_4697: Psyr_4697 - Aminoglycoside phosphotransferase, at 5,565,639 to 5,566,613
_4697
Psyr_4698: Psyr_4698 - RarD protein, at 5,567,144 to 5,568,031
_4698
Position (kb) 5565
5566
5567 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5564.751 kb on + strand, within Psyr_4696 at 5564.751 kb on + strand, within Psyr_4696 at 5564.751 kb on + strand, within Psyr_4696 at 5564.786 kb on + strand, within Psyr_4696 at 5564.786 kb on + strand, within Psyr_4696 at 5564.787 kb on - strand, within Psyr_4696 at 5564.787 kb on - strand, within Psyr_4696 at 5564.787 kb on - strand, within Psyr_4696 at 5564.858 kb on - strand, within Psyr_4696 at 5565.151 kb on + strand, within Psyr_4696 at 5565.152 kb on - strand, within Psyr_4696 at 5565.152 kb on - strand, within Psyr_4696 at 5565.176 kb on + strand, within Psyr_4696 at 5565.178 kb on + strand, within Psyr_4696 at 5565.366 kb on + strand at 5565.366 kb on + strand at 5565.366 kb on + strand at 5565.366 kb on + strand at 5565.367 kb on - strand at 5565.367 kb on - strand at 5565.485 kb on + strand at 5565.486 kb on - strand at 5565.555 kb on + strand at 5565.593 kb on + strand at 5565.593 kb on + strand at 5565.634 kb on + strand at 5565.635 kb on - strand at 5565.635 kb on - strand at 5565.662 kb on + strand at 5565.662 kb on + strand at 5565.662 kb on + strand at 5565.662 kb on + strand at 5565.662 kb on + strand at 5565.662 kb on + strand at 5565.663 kb on - strand at 5565.663 kb on - strand at 5565.663 kb on - strand at 5565.663 kb on - strand at 5565.753 kb on + strand, within Psyr_4697 at 5565.754 kb on - strand, within Psyr_4697 at 5566.013 kb on - strand, within Psyr_4697 at 5566.323 kb on - strand, within Psyr_4697 at 5566.390 kb on - strand, within Psyr_4697 at 5566.464 kb on + strand, within Psyr_4697 at 5566.465 kb on - strand, within Psyr_4697 at 5566.465 kb on - strand, within Psyr_4697 at 5566.465 kb on - strand, within Psyr_4697 at 5566.774 kb on + strand at 5566.783 kb on - strand at 5566.786 kb on + strand at 5566.786 kb on + strand at 5566.786 kb on + strand at 5566.787 kb on - strand at 5566.787 kb on - strand at 5566.787 kb on - strand at 5566.787 kb on - strand at 5566.787 kb on - strand at 5566.787 kb on - strand at 5566.833 kb on + strand at 5566.834 kb on - strand at 5566.838 kb on - strand at 5566.838 kb on - strand at 5566.976 kb on + strand at 5567.049 kb on + strand at 5567.049 kb on + strand at 5567.049 kb on + strand at 5567.049 kb on + strand at 5567.049 kb on + strand at 5567.050 kb on - strand at 5567.050 kb on - strand at 5567.050 kb on - strand at 5567.050 kb on - strand at 5567.050 kb on - strand at 5567.050 kb on - strand at 5567.051 kb on + strand at 5567.051 kb on + strand at 5567.051 kb on + strand at 5567.052 kb on - strand at 5567.052 kb on - strand at 5567.076 kb on - strand at 5567.109 kb on + strand at 5567.110 kb on - strand at 5567.110 kb on - strand at 5567.110 kb on - strand at 5567.128 kb on - strand at 5567.130 kb on + strand at 5567.131 kb on - strand at 5567.131 kb on - strand at 5567.171 kb on + strand at 5567.171 kb on + strand at 5567.172 kb on - strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.219 kb on + strand at 5567.219 kb on + strand at 5567.219 kb on + strand at 5567.219 kb on + strand at 5567.220 kb on - strand at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.503 kb on - strand, within Psyr_4698 at 5567.503 kb on - strand, within Psyr_4698
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 5,564,751 + Psyr_4696 0.32 -0.1 5,564,751 + Psyr_4696 0.32 -0.7 5,564,751 + Psyr_4696 0.32 -0.6 5,564,786 + Psyr_4696 0.35 +0.6 5,564,786 + Psyr_4696 0.35 -0.9 5,564,787 - Psyr_4696 0.35 -0.0 5,564,787 - Psyr_4696 0.35 -0.2 5,564,787 - Psyr_4696 0.35 -1.0 5,564,858 - Psyr_4696 0.42 +0.1 5,565,151 + Psyr_4696 0.71 -1.0 5,565,152 - Psyr_4696 0.71 +0.1 5,565,152 - Psyr_4696 0.71 -0.9 5,565,176 + Psyr_4696 0.73 +0.4 5,565,178 + Psyr_4696 0.74 -1.2 5,565,366 + +1.0 5,565,366 + +0.5 5,565,366 + -0.1 5,565,366 + -0.5 5,565,367 - -0.2 5,565,367 - +0.5 5,565,485 + +0.2 5,565,486 - -0.7 5,565,555 + -0.2 5,565,593 + -0.3 5,565,593 + +0.2 5,565,634 + +1.0 5,565,635 - -1.2 5,565,635 - +2.6 5,565,662 + -0.8 5,565,662 + +0.3 5,565,662 + -0.6 5,565,662 + +2.6 5,565,662 + -0.4 5,565,662 + -0.1 5,565,663 - -1.2 5,565,663 - -0.0 5,565,663 - +0.2 5,565,663 - +1.6 5,565,753 + Psyr_4697 0.12 -1.2 5,565,754 - Psyr_4697 0.12 -1.3 5,566,013 - Psyr_4697 0.38 +0.1 5,566,323 - Psyr_4697 0.70 -3.2 5,566,390 - Psyr_4697 0.77 -0.0 5,566,464 + Psyr_4697 0.85 -0.4 5,566,465 - Psyr_4697 0.85 +2.0 5,566,465 - Psyr_4697 0.85 -1.3 5,566,465 - Psyr_4697 0.85 -0.3 5,566,774 + -0.9 5,566,783 - -0.8 5,566,786 + +1.0 5,566,786 + -0.4 5,566,786 + +0.4 5,566,787 - -0.7 5,566,787 - -0.4 5,566,787 - -0.3 5,566,787 - +0.5 5,566,787 - +0.6 5,566,787 - +0.8 5,566,833 + +0.7 5,566,834 - -0.8 5,566,838 - +0.6 5,566,838 - +0.1 5,566,976 + -1.3 5,567,049 + +0.2 5,567,049 + -0.8 5,567,049 + +0.2 5,567,049 + +0.1 5,567,049 + +0.5 5,567,050 - +1.0 5,567,050 - +0.3 5,567,050 - -0.2 5,567,050 - +1.5 5,567,050 - -0.2 5,567,050 - -0.0 5,567,051 + +0.5 5,567,051 + -0.9 5,567,051 + -0.6 5,567,052 - +0.7 5,567,052 - -0.0 5,567,076 - -1.0 5,567,109 + -0.5 5,567,110 - +0.6 5,567,110 - +0.1 5,567,110 - +0.8 5,567,128 - +0.5 5,567,130 + -0.0 5,567,131 - +0.6 5,567,131 - +0.1 5,567,171 + -0.9 5,567,171 + +0.7 5,567,172 - -0.6 5,567,192 + -1.5 5,567,192 + +2.3 5,567,192 + -0.0 5,567,192 + +1.0 5,567,192 + -0.6 5,567,192 + +0.1 5,567,192 + +1.7 5,567,192 + +0.8 5,567,192 + +2.0 5,567,192 + -0.3 5,567,192 + +0.5 5,567,192 + +0.3 5,567,192 + -0.3 5,567,193 - -0.3 5,567,193 - -2.2 5,567,193 - -1.0 5,567,193 - +0.8 5,567,193 - -2.3 5,567,193 - +2.0 5,567,193 - -1.8 5,567,193 - -1.3 5,567,193 - -0.3 5,567,193 - +0.8 5,567,219 + -0.5 5,567,219 + -0.0 5,567,219 + -0.2 5,567,219 + -0.4 5,567,220 - -0.5 5,567,411 + Psyr_4698 0.30 -2.0 5,567,411 + Psyr_4698 0.30 -0.2 5,567,411 + Psyr_4698 0.30 -1.6 5,567,411 + Psyr_4698 0.30 -0.7 5,567,411 + Psyr_4698 0.30 -0.8 5,567,411 + Psyr_4698 0.30 -0.6 5,567,411 + Psyr_4698 0.30 -0.8 5,567,411 + Psyr_4698 0.30 +0.9 5,567,411 + Psyr_4698 0.30 -0.1 5,567,411 + Psyr_4698 0.30 -0.5 5,567,412 - Psyr_4698 0.30 +0.8 5,567,412 - Psyr_4698 0.30 +0.5 5,567,412 - Psyr_4698 0.30 +0.5 5,567,412 - Psyr_4698 0.30 -0.4 5,567,412 - Psyr_4698 0.30 +0.8 5,567,412 - Psyr_4698 0.30 +0.2 5,567,412 - Psyr_4698 0.30 +1.0 5,567,412 - Psyr_4698 0.30 -1.3 5,567,412 - Psyr_4698 0.30 +0.7 5,567,412 - Psyr_4698 0.30 -0.8 5,567,462 + Psyr_4698 0.36 +1.4 5,567,462 + Psyr_4698 0.36 -0.0 5,567,462 + Psyr_4698 0.36 -0.4 5,567,462 + Psyr_4698 0.36 -0.6 5,567,462 + Psyr_4698 0.36 +0.4 5,567,462 + Psyr_4698 0.36 -0.8 5,567,462 + Psyr_4698 0.36 +0.2 5,567,462 + Psyr_4698 0.36 -0.8 5,567,462 + Psyr_4698 0.36 +0.1 5,567,462 + Psyr_4698 0.36 +0.1 5,567,462 + Psyr_4698 0.36 -0.8 5,567,462 + Psyr_4698 0.36 +1.7 5,567,463 - Psyr_4698 0.36 +0.8 5,567,463 - Psyr_4698 0.36 +0.2 5,567,463 - Psyr_4698 0.36 -0.5 5,567,463 - Psyr_4698 0.36 -0.9 5,567,463 - Psyr_4698 0.36 -0.8 5,567,463 - Psyr_4698 0.36 +0.4 5,567,463 - Psyr_4698 0.36 -2.3 5,567,503 - Psyr_4698 0.40 +2.0 5,567,503 - Psyr_4698 0.40 +0.3
Or see this region's nucleotide sequence