Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4581 and Psyr_4582 are separated by 412 nucleotides Psyr_4582 and Psyr_4583 are separated by 11 nucleotides Psyr_4583 and Psyr_4584 are separated by 114 nucleotides
Psyr_4581: Psyr_4581 - anthranilate synthase, component II, at 5,443,049 to 5,443,648
_4581
Psyr_4582: Psyr_4582 - hypothetical protein, at 5,444,061 to 5,444,558
_4582
Psyr_4583: Psyr_4583 - Glycoside hydrolase, family 19, at 5,444,570 to 5,445,115
_4583
Psyr_4584: Psyr_4584 - Protein of unknown function DUF144, at 5,445,230 to 5,445,796
_4584
Position (kb) 5444
5445 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5443.244 kb on - strand, within Psyr_4581 at 5443.480 kb on + strand, within Psyr_4581 at 5443.480 kb on + strand, within Psyr_4581 at 5443.611 kb on + strand at 5443.611 kb on + strand at 5443.611 kb on + strand at 5443.611 kb on + strand at 5443.612 kb on - strand at 5443.612 kb on - strand at 5443.612 kb on - strand at 5443.616 kb on - strand at 5443.626 kb on + strand at 5443.627 kb on - strand at 5443.627 kb on - strand at 5443.627 kb on - strand at 5443.627 kb on - strand at 5443.627 kb on - strand at 5443.671 kb on - strand at 5443.772 kb on + strand at 5443.772 kb on + strand at 5443.772 kb on + strand at 5443.773 kb on - strand at 5443.779 kb on - strand at 5443.806 kb on + strand at 5443.806 kb on + strand at 5443.806 kb on + strand at 5443.911 kb on - strand at 5443.935 kb on + strand at 5443.935 kb on + strand at 5443.935 kb on + strand at 5443.935 kb on + strand at 5443.936 kb on - strand at 5443.971 kb on + strand at 5444.083 kb on + strand at 5444.083 kb on + strand at 5444.083 kb on + strand at 5444.083 kb on + strand at 5444.084 kb on - strand at 5444.084 kb on - strand at 5444.084 kb on - strand at 5444.125 kb on + strand, within Psyr_4582 at 5444.513 kb on + strand at 5444.513 kb on + strand at 5444.513 kb on + strand at 5444.514 kb on - strand at 5444.558 kb on + strand at 5444.599 kb on - strand at 5444.799 kb on + strand, within Psyr_4583 at 5444.800 kb on - strand, within Psyr_4583 at 5444.800 kb on - strand, within Psyr_4583 at 5444.800 kb on - strand, within Psyr_4583 at 5444.907 kb on + strand, within Psyr_4583 at 5444.907 kb on + strand, within Psyr_4583 at 5444.908 kb on - strand, within Psyr_4583 at 5444.919 kb on + strand, within Psyr_4583 at 5444.919 kb on + strand, within Psyr_4583 at 5444.919 kb on + strand, within Psyr_4583 at 5444.919 kb on + strand, within Psyr_4583 at 5444.920 kb on - strand, within Psyr_4583 at 5444.920 kb on - strand, within Psyr_4583 at 5444.933 kb on + strand, within Psyr_4583 at 5444.934 kb on - strand, within Psyr_4583 at 5444.946 kb on + strand, within Psyr_4583 at 5444.946 kb on + strand, within Psyr_4583 at 5444.947 kb on - strand, within Psyr_4583 at 5444.947 kb on - strand, within Psyr_4583 at 5444.947 kb on - strand, within Psyr_4583 at 5444.972 kb on + strand, within Psyr_4583 at 5444.973 kb on - strand, within Psyr_4583 at 5444.973 kb on - strand, within Psyr_4583 at 5445.092 kb on + strand at 5445.092 kb on + strand at 5445.101 kb on + strand at 5445.129 kb on - strand at 5445.141 kb on + strand at 5445.155 kb on - strand at 5445.168 kb on + strand at 5445.187 kb on - strand at 5445.187 kb on - strand at 5445.233 kb on + strand at 5445.233 kb on + strand at 5445.233 kb on + strand at 5445.233 kb on + strand at 5445.234 kb on - strand at 5445.234 kb on - strand at 5445.234 kb on - strand at 5445.234 kb on - strand at 5445.234 kb on - strand at 5445.234 kb on - strand at 5445.322 kb on - strand, within Psyr_4584 at 5445.322 kb on - strand, within Psyr_4584 at 5445.385 kb on - strand, within Psyr_4584 at 5445.400 kb on + strand, within Psyr_4584 at 5445.400 kb on + strand, within Psyr_4584 at 5445.400 kb on + strand, within Psyr_4584 at 5445.400 kb on + strand, within Psyr_4584 at 5445.401 kb on - strand, within Psyr_4584 at 5445.401 kb on - strand, within Psyr_4584 at 5445.401 kb on - strand, within Psyr_4584 at 5445.401 kb on - strand, within Psyr_4584 at 5445.401 kb on - strand, within Psyr_4584 at 5445.401 kb on - strand, within Psyr_4584 at 5445.401 kb on - strand, within Psyr_4584 at 5445.419 kb on + strand, within Psyr_4584 at 5445.420 kb on - strand, within Psyr_4584 at 5445.455 kb on + strand, within Psyr_4584 at 5445.456 kb on - strand, within Psyr_4584 at 5445.510 kb on + strand, within Psyr_4584 at 5445.510 kb on + strand, within Psyr_4584 at 5445.511 kb on - strand, within Psyr_4584 at 5445.511 kb on - strand, within Psyr_4584 at 5445.511 kb on - strand, within Psyr_4584 at 5445.511 kb on - strand, within Psyr_4584 at 5445.513 kb on + strand, within Psyr_4584 at 5445.513 kb on + strand, within Psyr_4584 at 5445.513 kb on + strand, within Psyr_4584 at 5445.513 kb on + strand, within Psyr_4584 at 5445.514 kb on - strand, within Psyr_4584 at 5445.514 kb on - strand, within Psyr_4584 at 5445.514 kb on - strand, within Psyr_4584 at 5445.514 kb on - strand, within Psyr_4584 at 5445.514 kb on - strand, within Psyr_4584 at 5445.514 kb on - strand, within Psyr_4584 at 5445.514 kb on - strand, within Psyr_4584
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 5,443,244 - Psyr_4581 0.33 -2.9 5,443,480 + Psyr_4581 0.72 -3.3 5,443,480 + Psyr_4581 0.72 -1.3 5,443,611 + -2.4 5,443,611 + -1.3 5,443,611 + -2.9 5,443,611 + -3.1 5,443,612 - -2.8 5,443,612 - -1.7 5,443,612 - -2.9 5,443,616 - -3.2 5,443,626 + -4.2 5,443,627 - -2.8 5,443,627 - -2.8 5,443,627 - -3.7 5,443,627 - -1.9 5,443,627 - -2.3 5,443,671 - +2.7 5,443,772 + -3.7 5,443,772 + -0.1 5,443,772 + -1.1 5,443,773 - +0.9 5,443,779 - +0.2 5,443,806 + -0.9 5,443,806 + -0.1 5,443,806 + +0.1 5,443,911 - +0.1 5,443,935 + +1.9 5,443,935 + -0.8 5,443,935 + -0.1 5,443,935 + -1.0 5,443,936 - +0.7 5,443,971 + -1.4 5,444,083 + +1.2 5,444,083 + +1.9 5,444,083 + -0.0 5,444,083 + +1.5 5,444,084 - +0.2 5,444,084 - -0.4 5,444,084 - +0.8 5,444,125 + Psyr_4582 0.13 -0.8 5,444,513 + -0.1 5,444,513 + +0.2 5,444,513 + +0.2 5,444,514 - -0.4 5,444,558 + -1.7 5,444,599 - +1.9 5,444,799 + Psyr_4583 0.42 -0.8 5,444,800 - Psyr_4583 0.42 +0.1 5,444,800 - Psyr_4583 0.42 -1.2 5,444,800 - Psyr_4583 0.42 -1.5 5,444,907 + Psyr_4583 0.62 +0.7 5,444,907 + Psyr_4583 0.62 +0.6 5,444,908 - Psyr_4583 0.62 +1.9 5,444,919 + Psyr_4583 0.64 -1.3 5,444,919 + Psyr_4583 0.64 +0.2 5,444,919 + Psyr_4583 0.64 -0.5 5,444,919 + Psyr_4583 0.64 +1.9 5,444,920 - Psyr_4583 0.64 +0.3 5,444,920 - Psyr_4583 0.64 -0.7 5,444,933 + Psyr_4583 0.66 +0.1 5,444,934 - Psyr_4583 0.67 +0.4 5,444,946 + Psyr_4583 0.69 -0.4 5,444,946 + Psyr_4583 0.69 +1.2 5,444,947 - Psyr_4583 0.69 -0.0 5,444,947 - Psyr_4583 0.69 +1.5 5,444,947 - Psyr_4583 0.69 +0.0 5,444,972 + Psyr_4583 0.74 +0.5 5,444,973 - Psyr_4583 0.74 +0.2 5,444,973 - Psyr_4583 0.74 -0.9 5,445,092 + -2.5 5,445,092 + +0.2 5,445,101 + +1.7 5,445,129 - -0.2 5,445,141 + -0.1 5,445,155 - -0.2 5,445,168 + +1.7 5,445,187 - -0.7 5,445,187 - -0.1 5,445,233 + +0.2 5,445,233 + +0.7 5,445,233 + -2.4 5,445,233 + -0.7 5,445,234 - -0.9 5,445,234 - -1.3 5,445,234 - +0.1 5,445,234 - +1.2 5,445,234 - +1.0 5,445,234 - -1.1 5,445,322 - Psyr_4584 0.16 +0.1 5,445,322 - Psyr_4584 0.16 -0.1 5,445,385 - Psyr_4584 0.27 +0.8 5,445,400 + Psyr_4584 0.30 +0.2 5,445,400 + Psyr_4584 0.30 +0.5 5,445,400 + Psyr_4584 0.30 -0.4 5,445,400 + Psyr_4584 0.30 +0.6 5,445,401 - Psyr_4584 0.30 -0.0 5,445,401 - Psyr_4584 0.30 -0.4 5,445,401 - Psyr_4584 0.30 -1.0 5,445,401 - Psyr_4584 0.30 -0.5 5,445,401 - Psyr_4584 0.30 -0.4 5,445,401 - Psyr_4584 0.30 +0.5 5,445,401 - Psyr_4584 0.30 +0.9 5,445,419 + Psyr_4584 0.33 +0.2 5,445,420 - Psyr_4584 0.34 +0.8 5,445,455 + Psyr_4584 0.40 -1.2 5,445,456 - Psyr_4584 0.40 -1.2 5,445,510 + Psyr_4584 0.49 -0.5 5,445,510 + Psyr_4584 0.49 -3.0 5,445,511 - Psyr_4584 0.50 -1.4 5,445,511 - Psyr_4584 0.50 +2.5 5,445,511 - Psyr_4584 0.50 +0.8 5,445,511 - Psyr_4584 0.50 +0.3 5,445,513 + Psyr_4584 0.50 -0.1 5,445,513 + Psyr_4584 0.50 +0.9 5,445,513 + Psyr_4584 0.50 +1.2 5,445,513 + Psyr_4584 0.50 -0.9 5,445,514 - Psyr_4584 0.50 -0.4 5,445,514 - Psyr_4584 0.50 -0.1 5,445,514 - Psyr_4584 0.50 +1.3 5,445,514 - Psyr_4584 0.50 +0.5 5,445,514 - Psyr_4584 0.50 -2.2 5,445,514 - Psyr_4584 0.50 +0.3 5,445,514 - Psyr_4584 0.50 +0.7
Or see this region's nucleotide sequence