Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4408

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4407 and Psyr_4408 are separated by 91 nucleotidesPsyr_4408 and Psyr_4409 are separated by 69 nucleotidesPsyr_4409 and Psyr_4410 are separated by 6 nucleotides Psyr_4407: Psyr_4407 - phosphoribosylamine--glycine ligase, at 5,269,495 to 5,270,790 _4407 Psyr_4408: Psyr_4408 - Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase, at 5,270,882 to 5,273,671 _4408 Psyr_4409: Psyr_4409 - Multiple antibiotic resistance (MarC)-related protein, at 5,273,741 to 5,274,337 _4409 Psyr_4410: Psyr_4410 - conserved hypothetical protein, at 5,274,344 to 5,274,979 _4410 Position (kb) 5270 5271 5272 5273 5274Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5270.108 kb on + strand, within Psyr_4407at 5270.109 kb on - strand, within Psyr_4407at 5270.188 kb on + strand, within Psyr_4407at 5270.287 kb on + strand, within Psyr_4407at 5270.524 kb on + strand, within Psyr_4407at 5270.639 kb on + strand, within Psyr_4407at 5270.639 kb on + strand, within Psyr_4407at 5270.639 kb on + strand, within Psyr_4407at 5270.905 kb on - strandat 5271.096 kb on + strandat 5271.096 kb on + strandat 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.179 kb on + strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.180 kb on - strand, within Psyr_4408at 5271.213 kb on + strand, within Psyr_4408at 5271.214 kb on - strand, within Psyr_4408at 5271.214 kb on - strand, within Psyr_4408at 5271.214 kb on - strand, within Psyr_4408at 5271.231 kb on + strand, within Psyr_4408at 5271.304 kb on + strand, within Psyr_4408at 5271.307 kb on - strand, within Psyr_4408at 5271.309 kb on - strand, within Psyr_4408at 5271.508 kb on - strand, within Psyr_4408at 5271.626 kb on + strand, within Psyr_4408at 5271.626 kb on + strand, within Psyr_4408at 5271.627 kb on - strand, within Psyr_4408at 5271.632 kb on + strand, within Psyr_4408at 5271.876 kb on - strand, within Psyr_4408at 5272.181 kb on + strand, within Psyr_4408at 5272.324 kb on + strand, within Psyr_4408at 5272.531 kb on + strand, within Psyr_4408at 5272.531 kb on + strand, within Psyr_4408at 5272.532 kb on - strand, within Psyr_4408at 5272.609 kb on + strand, within Psyr_4408at 5272.720 kb on + strand, within Psyr_4408at 5272.721 kb on - strand, within Psyr_4408at 5272.723 kb on + strand, within Psyr_4408at 5272.723 kb on + strand, within Psyr_4408at 5272.723 kb on + strand, within Psyr_4408at 5272.724 kb on - strand, within Psyr_4408at 5273.475 kb on + strandat 5273.479 kb on + strandat 5273.699 kb on + strandat 5273.699 kb on + strandat 5273.699 kb on + strandat 5273.700 kb on - strandat 5273.786 kb on + strandat 5273.787 kb on - strandat 5273.787 kb on - strandat 5273.899 kb on - strand, within Psyr_4409at 5273.906 kb on + strand, within Psyr_4409at 5273.906 kb on + strand, within Psyr_4409at 5273.906 kb on + strand, within Psyr_4409at 5273.906 kb on + strand, within Psyr_4409at 5273.907 kb on - strand, within Psyr_4409at 5273.934 kb on + strand, within Psyr_4409at 5273.935 kb on - strand, within Psyr_4409at 5273.935 kb on - strand, within Psyr_4409at 5273.935 kb on - strand, within Psyr_4409at 5273.935 kb on - strand, within Psyr_4409at 5273.935 kb on - strand, within Psyr_4409at 5274.037 kb on + strand, within Psyr_4409at 5274.167 kb on - strand, within Psyr_4409at 5274.203 kb on + strand, within Psyr_4409at 5274.204 kb on - strand, within Psyr_4409at 5274.204 kb on - strand, within Psyr_4409at 5274.349 kb on + strandat 5274.349 kb on + strandat 5274.349 kb on + strandat 5274.349 kb on + strandat 5274.349 kb on + strandat 5274.350 kb on - strandat 5274.350 kb on - strandat 5274.350 kb on - strandat 5274.350 kb on - strandat 5274.390 kb on + strandat 5274.420 kb on + strand, within Psyr_4410at 5274.421 kb on - strand, within Psyr_4410at 5274.421 kb on - strand, within Psyr_4410at 5274.421 kb on - strand, within Psyr_4410at 5274.428 kb on - strand, within Psyr_4410at 5274.441 kb on + strand, within Psyr_4410at 5274.442 kb on - strand, within Psyr_4410at 5274.442 kb on - strand, within Psyr_4410at 5274.489 kb on + strand, within Psyr_4410at 5274.489 kb on + strand, within Psyr_4410at 5274.546 kb on + strand, within Psyr_4410at 5274.546 kb on + strand, within Psyr_4410at 5274.546 kb on + strand, within Psyr_4410at 5274.546 kb on + strand, within Psyr_4410at 5274.547 kb on - strand, within Psyr_4410at 5274.547 kb on - strand, within Psyr_4410at 5274.609 kb on + strand, within Psyr_4410at 5274.609 kb on + strand, within Psyr_4410at 5274.610 kb on - strand, within Psyr_4410at 5274.610 kb on - strand, within Psyr_4410at 5274.610 kb on - strand, within Psyr_4410at 5274.610 kb on - strand, within Psyr_4410at 5274.610 kb on - strand, within Psyr_4410at 5274.610 kb on - strand, within Psyr_4410

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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5,270,108 + Psyr_4407 0.47 +0.0
5,270,109 - Psyr_4407 0.47 +0.3
5,270,188 + Psyr_4407 0.53 +0.1
5,270,287 + Psyr_4407 0.61 -0.9
5,270,524 + Psyr_4407 0.79 -0.7
5,270,639 + Psyr_4407 0.88 -1.4
5,270,639 + Psyr_4407 0.88 -0.1
5,270,639 + Psyr_4407 0.88 -0.7
5,270,905 - -0.4
5,271,096 + -1.4
5,271,096 + -0.7
5,271,179 + Psyr_4408 0.11 -0.4
5,271,179 + Psyr_4408 0.11 -0.7
5,271,179 + Psyr_4408 0.11 +1.5
5,271,179 + Psyr_4408 0.11 -2.1
5,271,179 + Psyr_4408 0.11 -1.1
5,271,179 + Psyr_4408 0.11 -2.7
5,271,179 + Psyr_4408 0.11 -0.3
5,271,179 + Psyr_4408 0.11 -1.0
5,271,179 + Psyr_4408 0.11 -1.9
5,271,179 + Psyr_4408 0.11 -1.0
5,271,179 + Psyr_4408 0.11 +0.3
5,271,179 + Psyr_4408 0.11 -1.1
5,271,179 + Psyr_4408 0.11 -1.0
5,271,179 + Psyr_4408 0.11 -2.7
5,271,179 + Psyr_4408 0.11 +1.5
5,271,179 + Psyr_4408 0.11 -0.1
5,271,179 + Psyr_4408 0.11 -0.1
5,271,179 + Psyr_4408 0.11 +0.2
5,271,180 - Psyr_4408 0.11 -1.1
5,271,180 - Psyr_4408 0.11 -1.9
5,271,180 - Psyr_4408 0.11 -0.3
5,271,180 - Psyr_4408 0.11 -0.1
5,271,180 - Psyr_4408 0.11 -0.4
5,271,180 - Psyr_4408 0.11 +0.2
5,271,180 - Psyr_4408 0.11 -0.8
5,271,180 - Psyr_4408 0.11 -2.4
5,271,180 - Psyr_4408 0.11 -1.4
5,271,180 - Psyr_4408 0.11 -1.1
5,271,180 - Psyr_4408 0.11 -2.4
5,271,180 - Psyr_4408 0.11 +0.9
5,271,180 - Psyr_4408 0.11 -0.7
5,271,180 - Psyr_4408 0.11 -1.7
5,271,180 - Psyr_4408 0.11 +0.7
5,271,180 - Psyr_4408 0.11 -1.4
5,271,180 - Psyr_4408 0.11 +0.9
5,271,213 + Psyr_4408 0.12 -1.7
5,271,214 - Psyr_4408 0.12 -0.1
5,271,214 - Psyr_4408 0.12 +0.2
5,271,214 - Psyr_4408 0.12 -0.1
5,271,231 + Psyr_4408 0.13 -1.0
5,271,304 + Psyr_4408 0.15 +2.2
5,271,307 - Psyr_4408 0.15 -2.7
5,271,309 - Psyr_4408 0.15 -1.6
5,271,508 - Psyr_4408 0.22 -1.1
5,271,626 + Psyr_4408 0.27 -1.1
5,271,626 + Psyr_4408 0.27 -1.7
5,271,627 - Psyr_4408 0.27 -1.4
5,271,632 + Psyr_4408 0.27 -2.4
5,271,876 - Psyr_4408 0.36 -1.6
5,272,181 + Psyr_4408 0.47 -2.1
5,272,324 + Psyr_4408 0.52 -1.1
5,272,531 + Psyr_4408 0.59 -1.1
5,272,531 + Psyr_4408 0.59 -3.0
5,272,532 - Psyr_4408 0.59 -0.7
5,272,609 + Psyr_4408 0.62 +0.9
5,272,720 + Psyr_4408 0.66 -1.3
5,272,721 - Psyr_4408 0.66 +0.3
5,272,723 + Psyr_4408 0.66 -1.4
5,272,723 + Psyr_4408 0.66 -1.7
5,272,723 + Psyr_4408 0.66 -0.7
5,272,724 - Psyr_4408 0.66 -0.9
5,273,475 + -0.7
5,273,479 + +0.9
5,273,699 + +0.6
5,273,699 + -0.5
5,273,699 + +0.4
5,273,700 - -1.1
5,273,786 + +0.2
5,273,787 - +0.1
5,273,787 - +0.9
5,273,899 - Psyr_4409 0.26 -1.1
5,273,906 + Psyr_4409 0.28 +1.5
5,273,906 + Psyr_4409 0.28 +0.2
5,273,906 + Psyr_4409 0.28 +0.2
5,273,906 + Psyr_4409 0.28 +0.2
5,273,907 - Psyr_4409 0.28 +1.3
5,273,934 + Psyr_4409 0.32 -1.5
5,273,935 - Psyr_4409 0.32 -0.3
5,273,935 - Psyr_4409 0.32 -0.7
5,273,935 - Psyr_4409 0.32 -0.0
5,273,935 - Psyr_4409 0.32 +1.0
5,273,935 - Psyr_4409 0.32 -0.5
5,274,037 + Psyr_4409 0.50 +0.8
5,274,167 - Psyr_4409 0.71 -0.9
5,274,203 + Psyr_4409 0.77 +0.1
5,274,204 - Psyr_4409 0.78 +0.2
5,274,204 - Psyr_4409 0.78 +1.9
5,274,349 + +0.5
5,274,349 + -1.1
5,274,349 + -0.7
5,274,349 + -0.7
5,274,349 + +0.7
5,274,350 - +0.8
5,274,350 - +1.2
5,274,350 - -1.2
5,274,350 - +0.9
5,274,390 + +2.5
5,274,420 + Psyr_4410 0.12 -0.1
5,274,421 - Psyr_4410 0.12 -0.1
5,274,421 - Psyr_4410 0.12 +0.1
5,274,421 - Psyr_4410 0.12 -1.8
5,274,428 - Psyr_4410 0.13 -0.5
5,274,441 + Psyr_4410 0.15 -0.9
5,274,442 - Psyr_4410 0.15 -0.2
5,274,442 - Psyr_4410 0.15 -0.7
5,274,489 + Psyr_4410 0.23 -0.0
5,274,489 + Psyr_4410 0.23 +1.7
5,274,546 + Psyr_4410 0.32 -0.1
5,274,546 + Psyr_4410 0.32 -0.1
5,274,546 + Psyr_4410 0.32 -0.5
5,274,546 + Psyr_4410 0.32 -0.4
5,274,547 - Psyr_4410 0.32 -0.9
5,274,547 - Psyr_4410 0.32 -0.0
5,274,609 + Psyr_4410 0.42 -1.9
5,274,609 + Psyr_4410 0.42 -3.0
5,274,610 - Psyr_4410 0.42 -1.1
5,274,610 - Psyr_4410 0.42 +0.1
5,274,610 - Psyr_4410 0.42 +0.4
5,274,610 - Psyr_4410 0.42 +0.1
5,274,610 - Psyr_4410 0.42 +0.5
5,274,610 - Psyr_4410 0.42 +1.1

Or see this region's nucleotide sequence