Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4395 and Psyr_4396 are separated by 35 nucleotides Psyr_4396 and Psyr_4397 overlap by 4 nucleotides Psyr_4397 and Psyr_4398 are separated by 76 nucleotides
Psyr_4395: Psyr_4395 - type II secretion system protein, at 5,257,326 to 5,258,210
_4395
Psyr_4396: Psyr_4396 - TPR repeat protein, at 5,258,246 to 5,258,980
_4396
Psyr_4397: Psyr_4397 - conserved hypothetical protein, at 5,258,977 to 5,259,249
_4397
Psyr_4398: Psyr_4398 - Protein-disulfide reductase, at 5,259,326 to 5,261,146
_4398
Position (kb) 5258
5259
5260 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5258.091 kb on + strand, within Psyr_4395 at 5258.091 kb on + strand, within Psyr_4395 at 5258.091 kb on + strand, within Psyr_4395 at 5258.091 kb on + strand, within Psyr_4395 at 5258.092 kb on - strand, within Psyr_4395 at 5258.092 kb on - strand, within Psyr_4395 at 5258.092 kb on - strand, within Psyr_4395 at 5258.181 kb on - strand at 5258.181 kb on - strand at 5258.181 kb on - strand at 5258.188 kb on + strand at 5258.188 kb on + strand at 5258.189 kb on - strand at 5258.189 kb on - strand at 5258.189 kb on - strand at 5258.219 kb on + strand at 5258.219 kb on + strand at 5258.220 kb on - strand at 5258.220 kb on - strand at 5258.220 kb on - strand at 5258.220 kb on - strand at 5258.262 kb on + strand at 5258.262 kb on + strand at 5258.262 kb on + strand at 5258.263 kb on - strand at 5258.265 kb on + strand at 5258.265 kb on + strand at 5258.265 kb on + strand at 5258.265 kb on + strand at 5258.265 kb on + strand at 5258.266 kb on - strand at 5258.496 kb on + strand, within Psyr_4396 at 5258.497 kb on - strand, within Psyr_4396 at 5258.525 kb on + strand, within Psyr_4396 at 5258.687 kb on + strand, within Psyr_4396 at 5258.795 kb on + strand, within Psyr_4396 at 5258.795 kb on + strand, within Psyr_4396 at 5258.796 kb on - strand, within Psyr_4396 at 5258.796 kb on - strand, within Psyr_4396 at 5258.971 kb on - strand at 5258.971 kb on - strand at 5258.990 kb on + strand at 5258.990 kb on + strand at 5258.990 kb on + strand at 5258.991 kb on - strand at 5258.991 kb on - strand at 5258.991 kb on - strand at 5258.991 kb on - strand at 5258.991 kb on - strand at 5259.005 kb on + strand, within Psyr_4397 at 5259.005 kb on + strand, within Psyr_4397 at 5259.005 kb on + strand, within Psyr_4397 at 5259.005 kb on + strand, within Psyr_4397 at 5259.006 kb on - strand, within Psyr_4397 at 5259.006 kb on - strand, within Psyr_4397 at 5259.006 kb on - strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.187 kb on + strand, within Psyr_4397 at 5259.187 kb on + strand, within Psyr_4397 at 5259.187 kb on + strand, within Psyr_4397 at 5259.187 kb on + strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.205 kb on + strand, within Psyr_4397 at 5259.205 kb on + strand, within Psyr_4397 at 5259.247 kb on + strand at 5259.286 kb on + strand at 5259.286 kb on + strand at 5259.286 kb on + strand at 5259.287 kb on - strand at 5259.287 kb on - strand at 5259.287 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 5,258,091 + Psyr_4395 0.86 -1.3 5,258,091 + Psyr_4395 0.86 -1.7 5,258,091 + Psyr_4395 0.86 +0.6 5,258,091 + Psyr_4395 0.86 +3.9 5,258,092 - Psyr_4395 0.87 +0.3 5,258,092 - Psyr_4395 0.87 -0.1 5,258,092 - Psyr_4395 0.87 -0.1 5,258,181 - +0.9 5,258,181 - +0.1 5,258,181 - -0.1 5,258,188 + -0.0 5,258,188 + -1.4 5,258,189 - -0.8 5,258,189 - +0.9 5,258,189 - +0.8 5,258,219 + -0.0 5,258,219 + -0.3 5,258,220 - -0.7 5,258,220 - -0.2 5,258,220 - -0.0 5,258,220 - +0.5 5,258,262 + +0.5 5,258,262 + +0.6 5,258,262 + +0.1 5,258,263 - -1.1 5,258,265 + -1.4 5,258,265 + +1.5 5,258,265 + -0.7 5,258,265 + -0.5 5,258,265 + -0.6 5,258,266 - +0.9 5,258,496 + Psyr_4396 0.34 -0.5 5,258,497 - Psyr_4396 0.34 +1.1 5,258,525 + Psyr_4396 0.38 +0.7 5,258,687 + Psyr_4396 0.60 -0.3 5,258,795 + Psyr_4396 0.75 -1.2 5,258,795 + Psyr_4396 0.75 +0.5 5,258,796 - Psyr_4396 0.75 -0.7 5,258,796 - Psyr_4396 0.75 -0.0 5,258,971 - +0.6 5,258,971 - -0.0 5,258,990 + +2.1 5,258,990 + -0.0 5,258,990 + -0.7 5,258,991 - -0.6 5,258,991 - -0.5 5,258,991 - +1.2 5,258,991 - +0.3 5,258,991 - -0.3 5,259,005 + Psyr_4397 0.10 +1.3 5,259,005 + Psyr_4397 0.10 -1.4 5,259,005 + Psyr_4397 0.10 +0.3 5,259,005 + Psyr_4397 0.10 +0.2 5,259,006 - Psyr_4397 0.11 -0.2 5,259,006 - Psyr_4397 0.11 -1.3 5,259,006 - Psyr_4397 0.11 -0.1 5,259,181 + Psyr_4397 0.75 +1.3 5,259,181 + Psyr_4397 0.75 -0.2 5,259,181 + Psyr_4397 0.75 +0.9 5,259,181 + Psyr_4397 0.75 -1.4 5,259,181 + Psyr_4397 0.75 -0.4 5,259,181 + Psyr_4397 0.75 -0.8 5,259,181 + Psyr_4397 0.75 -1.1 5,259,181 + Psyr_4397 0.75 -1.3 5,259,181 + Psyr_4397 0.75 -0.0 5,259,181 + Psyr_4397 0.75 -0.8 5,259,181 + Psyr_4397 0.75 -1.1 5,259,181 + Psyr_4397 0.75 -0.1 5,259,181 + Psyr_4397 0.75 -0.3 5,259,181 + Psyr_4397 0.75 -2.4 5,259,182 - Psyr_4397 0.75 -0.8 5,259,182 - Psyr_4397 0.75 -0.5 5,259,182 - Psyr_4397 0.75 -0.0 5,259,182 - -0.7 5,259,182 - Psyr_4397 0.75 -0.8 5,259,182 - Psyr_4397 0.75 +0.9 5,259,182 - Psyr_4397 0.75 +0.2 5,259,182 - Psyr_4397 0.75 -2.3 5,259,182 - Psyr_4397 0.75 +0.4 5,259,182 - Psyr_4397 0.75 +0.4 5,259,182 - Psyr_4397 0.75 -0.6 5,259,182 - Psyr_4397 0.75 -0.1 5,259,182 - Psyr_4397 0.75 +0.4 5,259,182 - Psyr_4397 0.75 -1.4 5,259,182 - Psyr_4397 0.75 +0.3 5,259,182 - Psyr_4397 0.75 -1.4 5,259,182 - Psyr_4397 0.75 +2.1 5,259,182 - Psyr_4397 0.75 +0.6 5,259,183 + Psyr_4397 0.75 -1.4 5,259,183 + Psyr_4397 0.75 -0.3 5,259,183 + Psyr_4397 0.75 -0.7 5,259,183 + Psyr_4397 0.75 +1.3 5,259,183 + Psyr_4397 0.75 +0.6 5,259,183 + Psyr_4397 0.75 -0.3 5,259,183 + Psyr_4397 0.75 +1.3 5,259,183 + Psyr_4397 0.75 +0.1 5,259,183 + Psyr_4397 0.75 +1.9 5,259,183 + Psyr_4397 0.75 -1.1 5,259,183 + Psyr_4397 0.75 -0.9 5,259,183 + Psyr_4397 0.75 -0.4 5,259,184 - Psyr_4397 0.76 -1.2 5,259,184 - Psyr_4397 0.76 -0.7 5,259,184 - Psyr_4397 0.76 +0.7 5,259,184 - Psyr_4397 0.76 -1.9 5,259,184 - Psyr_4397 0.76 +0.1 5,259,184 - Psyr_4397 0.76 +0.9 5,259,184 - Psyr_4397 0.76 +0.4 5,259,184 - Psyr_4397 0.76 +1.6 5,259,184 - Psyr_4397 0.76 +0.3 5,259,184 - Psyr_4397 0.76 -0.1 5,259,184 - Psyr_4397 0.76 +0.4 5,259,184 - Psyr_4397 0.76 -0.4 5,259,184 - Psyr_4397 0.76 +0.9 5,259,187 + Psyr_4397 0.77 -0.6 5,259,187 + Psyr_4397 0.77 -0.7 5,259,187 + Psyr_4397 0.77 +0.4 5,259,187 + Psyr_4397 0.77 -2.7 5,259,188 - Psyr_4397 0.77 -0.8 5,259,188 - Psyr_4397 0.77 -0.8 5,259,188 - Psyr_4397 0.77 -0.7 5,259,188 - Psyr_4397 0.77 +0.3 5,259,188 - Psyr_4397 0.77 -0.6 5,259,188 - Psyr_4397 0.77 -0.6 5,259,188 - Psyr_4397 0.77 -0.1 5,259,188 - Psyr_4397 0.77 +2.5 5,259,188 - Psyr_4397 0.77 +0.9 5,259,205 + Psyr_4397 0.84 +0.6 5,259,205 + Psyr_4397 0.84 -0.9 5,259,247 + +0.9 5,259,286 + -0.4 5,259,286 + +0.1 5,259,286 + -0.5 5,259,287 - +0.4 5,259,287 - +0.4 5,259,287 - -2.1
Or see this region's nucleotide sequence