Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4326

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4325 and Psyr_4326 are separated by 92 nucleotidesPsyr_4326 and Psyr_4327 are separated by 122 nucleotidesPsyr_4327 and Psyr_4328 are separated by 161 nucleotides Psyr_4325: Psyr_4325 - transcriptional regulator, GntR family, at 5,177,347 to 5,178,687 _4325 Psyr_4326: Psyr_4326 - type III effector HopI1, at 5,178,780 to 5,179,790 _4326 Psyr_4327: Psyr_4327 - Endoribonuclease L-PSP, at 5,179,913 to 5,180,296 _4327 Psyr_4328: Psyr_4328 - Protein of unknown function DUF633, at 5,180,458 to 5,181,159 _4328 Position (kb) 5178 5179 5180Strain fitness (log2 ratio) -2 -1 0 1 2at 5177.903 kb on + strand, within Psyr_4325at 5177.903 kb on + strand, within Psyr_4325at 5177.903 kb on + strand, within Psyr_4325at 5177.903 kb on + strand, within Psyr_4325at 5177.903 kb on + strand, within Psyr_4325at 5177.903 kb on + strand, within Psyr_4325at 5177.903 kb on + strand, within Psyr_4325at 5177.903 kb on + strand, within Psyr_4325at 5177.903 kb on + strand, within Psyr_4325at 5177.903 kb on + strand, within Psyr_4325at 5177.903 kb on + strand, within Psyr_4325at 5177.903 kb on + strand, within Psyr_4325at 5177.903 kb on + strand, within Psyr_4325at 5177.904 kb on - strand, within Psyr_4325at 5177.904 kb on - strand, within Psyr_4325at 5177.904 kb on - strand, within Psyr_4325at 5177.904 kb on - strand, within Psyr_4325at 5177.904 kb on - strand, within Psyr_4325at 5177.904 kb on - strand, within Psyr_4325at 5177.904 kb on - strand, within Psyr_4325at 5177.904 kb on - strand, within Psyr_4325at 5177.904 kb on - strand, within Psyr_4325at 5177.904 kb on - strand, within Psyr_4325at 5177.904 kb on - strand, within Psyr_4325at 5177.904 kb on - strand, within Psyr_4325at 5177.904 kb on - strand, within Psyr_4325at 5177.904 kb on - strand, within Psyr_4325at 5177.975 kb on + strand, within Psyr_4325at 5177.975 kb on + strand, within Psyr_4325at 5177.976 kb on - strand, within Psyr_4325at 5178.019 kb on + strand, within Psyr_4325at 5178.019 kb on + strand, within Psyr_4325at 5178.019 kb on + strand, within Psyr_4325at 5178.019 kb on + strand, within Psyr_4325at 5178.019 kb on + strand, within Psyr_4325at 5178.020 kb on - strand, within Psyr_4325at 5178.020 kb on - strand, within Psyr_4325at 5178.057 kb on + strand, within Psyr_4325at 5178.058 kb on - strand, within Psyr_4325at 5178.058 kb on - strand, within Psyr_4325at 5178.128 kb on + strand, within Psyr_4325at 5178.129 kb on - strand, within Psyr_4325at 5178.129 kb on - strand, within Psyr_4325at 5178.129 kb on - strand, within Psyr_4325at 5178.163 kb on + strand, within Psyr_4325at 5178.163 kb on + strand, within Psyr_4325at 5178.163 kb on + strand, within Psyr_4325at 5178.163 kb on + strand, within Psyr_4325at 5178.164 kb on - strand, within Psyr_4325at 5178.164 kb on - strand, within Psyr_4325at 5178.229 kb on + strand, within Psyr_4325at 5178.229 kb on + strand, within Psyr_4325at 5178.229 kb on + strand, within Psyr_4325at 5178.230 kb on - strand, within Psyr_4325at 5178.230 kb on - strand, within Psyr_4325at 5178.230 kb on - strand, within Psyr_4325at 5178.230 kb on - strand, within Psyr_4325at 5178.230 kb on - strand, within Psyr_4325at 5178.230 kb on - strand, within Psyr_4325at 5178.230 kb on - strand, within Psyr_4325at 5178.230 kb on - strand, within Psyr_4325at 5178.277 kb on + strand, within Psyr_4325at 5178.277 kb on + strand, within Psyr_4325at 5178.277 kb on + strand, within Psyr_4325at 5178.278 kb on - strand, within Psyr_4325at 5178.278 kb on - strand, within Psyr_4325at 5178.278 kb on - strand, within Psyr_4325at 5178.278 kb on - strand, within Psyr_4325at 5178.278 kb on - strand, within Psyr_4325at 5178.279 kb on + strand, within Psyr_4325at 5178.279 kb on + strand, within Psyr_4325at 5178.280 kb on - strand, within Psyr_4325at 5178.280 kb on - strand, within Psyr_4325at 5178.390 kb on + strand, within Psyr_4325at 5178.390 kb on + strand, within Psyr_4325at 5178.390 kb on + strand, within Psyr_4325at 5178.394 kb on + strand, within Psyr_4325at 5178.394 kb on + strand, within Psyr_4325at 5178.394 kb on + strand, within Psyr_4325at 5178.394 kb on + strand, within Psyr_4325at 5178.394 kb on + strand, within Psyr_4325at 5178.394 kb on + strand, within Psyr_4325at 5178.395 kb on - strand, within Psyr_4325at 5178.395 kb on - strand, within Psyr_4325at 5178.395 kb on - strand, within Psyr_4325at 5178.395 kb on - strand, within Psyr_4325at 5178.488 kb on + strand, within Psyr_4325at 5178.488 kb on + strand, within Psyr_4325at 5178.488 kb on + strand, within Psyr_4325at 5178.488 kb on + strand, within Psyr_4325at 5178.489 kb on - strand, within Psyr_4325at 5178.489 kb on - strand, within Psyr_4325at 5178.489 kb on - strand, within Psyr_4325at 5178.489 kb on - strand, within Psyr_4325at 5178.489 kb on - strand, within Psyr_4325at 5178.489 kb on - strand, within Psyr_4325at 5178.489 kb on - strand, within Psyr_4325at 5178.520 kb on + strand, within Psyr_4325at 5178.555 kb on - strandat 5178.555 kb on - strandat 5178.620 kb on - strandat 5178.639 kb on - strandat 5178.665 kb on + strandat 5178.666 kb on - strandat 5178.666 kb on - strandat 5178.706 kb on + strandat 5178.706 kb on + strandat 5178.706 kb on + strandat 5178.707 kb on - strandat 5178.707 kb on - strandat 5178.707 kb on - strandat 5178.707 kb on - strandat 5178.747 kb on - strandat 5178.826 kb on + strandat 5178.931 kb on + strand, within Psyr_4326at 5178.931 kb on + strand, within Psyr_4326at 5178.931 kb on + strand, within Psyr_4326at 5178.932 kb on - strand, within Psyr_4326at 5178.932 kb on - strand, within Psyr_4326at 5178.932 kb on - strand, within Psyr_4326at 5178.932 kb on - strand, within Psyr_4326at 5178.952 kb on + strand, within Psyr_4326at 5178.952 kb on + strand, within Psyr_4326at 5178.952 kb on + strand, within Psyr_4326at 5178.952 kb on + strand, within Psyr_4326at 5178.953 kb on - strand, within Psyr_4326at 5179.009 kb on + strand, within Psyr_4326at 5179.009 kb on + strand, within Psyr_4326at 5179.010 kb on - strand, within Psyr_4326at 5179.010 kb on - strand, within Psyr_4326at 5179.010 kb on - strand, within Psyr_4326at 5179.010 kb on - strand, within Psyr_4326at 5179.010 kb on - strand, within Psyr_4326at 5179.010 kb on - strand, within Psyr_4326at 5179.206 kb on - strand, within Psyr_4326at 5179.206 kb on - strand, within Psyr_4326at 5179.206 kb on - strand, within Psyr_4326at 5179.343 kb on - strand, within Psyr_4326at 5179.439 kb on + strand, within Psyr_4326at 5179.720 kb on - strandat 5179.720 kb on - strandat 5179.907 kb on + strandat 5180.025 kb on + strand, within Psyr_4327at 5180.025 kb on + strand, within Psyr_4327at 5180.025 kb on + strand, within Psyr_4327at 5180.025 kb on + strand, within Psyr_4327at 5180.025 kb on + strand, within Psyr_4327at 5180.025 kb on + strand, within Psyr_4327at 5180.026 kb on - strand, within Psyr_4327at 5180.026 kb on - strand, within Psyr_4327at 5180.026 kb on - strand, within Psyr_4327at 5180.067 kb on + strand, within Psyr_4327at 5180.067 kb on + strand, within Psyr_4327at 5180.067 kb on + strand, within Psyr_4327at 5180.067 kb on + strand, within Psyr_4327at 5180.068 kb on - strand, within Psyr_4327at 5180.068 kb on - strand, within Psyr_4327at 5180.068 kb on - strand, within Psyr_4327at 5180.068 kb on - strand, within Psyr_4327at 5180.068 kb on - strand, within Psyr_4327at 5180.404 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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5,177,903 + Psyr_4325 0.41 +0.5
5,177,903 + Psyr_4325 0.41 -0.5
5,177,903 + Psyr_4325 0.41 -1.0
5,177,903 + Psyr_4325 0.41 +0.1
5,177,903 + Psyr_4325 0.41 +0.0
5,177,903 + Psyr_4325 0.41 -0.1
5,177,903 + Psyr_4325 0.41 +0.4
5,177,903 + Psyr_4325 0.41 +0.9
5,177,903 + Psyr_4325 0.41 +0.2
5,177,903 + Psyr_4325 0.41 -0.2
5,177,903 + Psyr_4325 0.41 -2.6
5,177,903 + Psyr_4325 0.41 +0.5
5,177,903 + Psyr_4325 0.41 -1.7
5,177,904 - Psyr_4325 0.42 -0.1
5,177,904 - Psyr_4325 0.42 -0.0
5,177,904 - Psyr_4325 0.42 +0.3
5,177,904 - Psyr_4325 0.42 -0.1
5,177,904 - Psyr_4325 0.42 -0.0
5,177,904 - Psyr_4325 0.42 -0.1
5,177,904 - Psyr_4325 0.42 +1.2
5,177,904 - Psyr_4325 0.42 +0.1
5,177,904 - Psyr_4325 0.42 +0.9
5,177,904 - Psyr_4325 0.42 -0.7
5,177,904 - Psyr_4325 0.42 +0.1
5,177,904 - Psyr_4325 0.42 +0.9
5,177,904 - Psyr_4325 0.42 -1.7
5,177,904 - Psyr_4325 0.42 +0.3
5,177,975 + Psyr_4325 0.47 -2.4
5,177,975 + Psyr_4325 0.47 -0.6
5,177,976 - Psyr_4325 0.47 -0.7
5,178,019 + Psyr_4325 0.50 -1.5
5,178,019 + Psyr_4325 0.50 -0.3
5,178,019 + Psyr_4325 0.50 -1.7
5,178,019 + Psyr_4325 0.50 -1.0
5,178,019 + Psyr_4325 0.50 -0.1
5,178,020 - Psyr_4325 0.50 -0.6
5,178,020 - Psyr_4325 0.50 +0.9
5,178,057 + Psyr_4325 0.53 -1.9
5,178,058 - Psyr_4325 0.53 +0.2
5,178,058 - Psyr_4325 0.53 +0.3
5,178,128 + Psyr_4325 0.58 -1.1
5,178,129 - Psyr_4325 0.58 -0.4
5,178,129 - Psyr_4325 0.58 -1.6
5,178,129 - Psyr_4325 0.58 +0.2
5,178,163 + Psyr_4325 0.61 -0.7
5,178,163 + Psyr_4325 0.61 +0.3
5,178,163 + Psyr_4325 0.61 +0.9
5,178,163 + Psyr_4325 0.61 -1.1
5,178,164 - Psyr_4325 0.61 +0.1
5,178,164 - Psyr_4325 0.61 -0.7
5,178,229 + Psyr_4325 0.66 -1.0
5,178,229 + Psyr_4325 0.66 -1.0
5,178,229 + Psyr_4325 0.66 -0.8
5,178,230 - Psyr_4325 0.66 -0.2
5,178,230 - Psyr_4325 0.66 +2.2
5,178,230 - Psyr_4325 0.66 +1.0
5,178,230 - Psyr_4325 0.66 -0.1
5,178,230 - Psyr_4325 0.66 -0.6
5,178,230 - Psyr_4325 0.66 -1.4
5,178,230 - Psyr_4325 0.66 -0.1
5,178,230 - Psyr_4325 0.66 -1.3
5,178,277 + Psyr_4325 0.69 +0.2
5,178,277 + Psyr_4325 0.69 -0.7
5,178,277 + Psyr_4325 0.69 +0.2
5,178,278 - Psyr_4325 0.69 +0.5
5,178,278 - Psyr_4325 0.69 +0.2
5,178,278 - Psyr_4325 0.69 +0.3
5,178,278 - Psyr_4325 0.69 +1.1
5,178,278 - Psyr_4325 0.69 +0.6
5,178,279 + Psyr_4325 0.70 +0.5
5,178,279 + Psyr_4325 0.70 -0.1
5,178,280 - Psyr_4325 0.70 +0.1
5,178,280 - Psyr_4325 0.70 +0.6
5,178,390 + Psyr_4325 0.78 -0.3
5,178,390 + Psyr_4325 0.78 +0.3
5,178,390 + Psyr_4325 0.78 +1.6
5,178,394 + Psyr_4325 0.78 -0.3
5,178,394 + Psyr_4325 0.78 +0.5
5,178,394 + Psyr_4325 0.78 +0.3
5,178,394 + Psyr_4325 0.78 +0.0
5,178,394 + Psyr_4325 0.78 -0.7
5,178,394 + Psyr_4325 0.78 -0.8
5,178,395 - Psyr_4325 0.78 -0.2
5,178,395 - Psyr_4325 0.78 +1.2
5,178,395 - Psyr_4325 0.78 +0.3
5,178,395 - Psyr_4325 0.78 -0.3
5,178,488 + Psyr_4325 0.85 -0.1
5,178,488 + Psyr_4325 0.85 -0.4
5,178,488 + Psyr_4325 0.85 -0.4
5,178,488 + Psyr_4325 0.85 +0.4
5,178,489 - Psyr_4325 0.85 -0.9
5,178,489 - Psyr_4325 0.85 +0.2
5,178,489 - Psyr_4325 0.85 +0.2
5,178,489 - Psyr_4325 0.85 +0.2
5,178,489 - Psyr_4325 0.85 +2.1
5,178,489 - Psyr_4325 0.85 +0.4
5,178,489 - Psyr_4325 0.85 -0.7
5,178,520 + Psyr_4325 0.87 -0.9
5,178,555 - +1.6
5,178,555 - -0.6
5,178,620 - -0.6
5,178,639 - +0.7
5,178,665 + +0.6
5,178,666 - -0.7
5,178,666 - -0.9
5,178,706 + -0.2
5,178,706 + +1.3
5,178,706 + -0.3
5,178,707 - +0.7
5,178,707 - -1.4
5,178,707 - +0.8
5,178,707 - +0.1
5,178,747 - -0.7
5,178,826 + -1.4
5,178,931 + Psyr_4326 0.15 -1.4
5,178,931 + Psyr_4326 0.15 -0.1
5,178,931 + Psyr_4326 0.15 -0.5
5,178,932 - Psyr_4326 0.15 +0.5
5,178,932 - Psyr_4326 0.15 -0.3
5,178,932 - Psyr_4326 0.15 +0.8
5,178,932 - Psyr_4326 0.15 -1.9
5,178,952 + Psyr_4326 0.17 -0.8
5,178,952 + Psyr_4326 0.17 -0.2
5,178,952 + Psyr_4326 0.17 +0.6
5,178,952 + Psyr_4326 0.17 -1.1
5,178,953 - Psyr_4326 0.17 -0.4
5,179,009 + Psyr_4326 0.23 -0.2
5,179,009 + Psyr_4326 0.23 -1.5
5,179,010 - Psyr_4326 0.23 +0.1
5,179,010 - Psyr_4326 0.23 -0.1
5,179,010 - Psyr_4326 0.23 +0.0
5,179,010 - Psyr_4326 0.23 +1.9
5,179,010 - Psyr_4326 0.23 -0.1
5,179,010 - Psyr_4326 0.23 +0.4
5,179,206 - Psyr_4326 0.42 -0.6
5,179,206 - Psyr_4326 0.42 -1.4
5,179,206 - Psyr_4326 0.42 -1.1
5,179,343 - Psyr_4326 0.56 -1.2
5,179,439 + Psyr_4326 0.65 -0.2
5,179,720 - +1.4
5,179,720 - -0.9
5,179,907 + +0.5
5,180,025 + Psyr_4327 0.29 -1.2
5,180,025 + Psyr_4327 0.29 -0.1
5,180,025 + Psyr_4327 0.29 -0.3
5,180,025 + Psyr_4327 0.29 +0.9
5,180,025 + Psyr_4327 0.29 -0.3
5,180,025 + Psyr_4327 0.29 +0.4
5,180,026 - Psyr_4327 0.29 +0.6
5,180,026 - Psyr_4327 0.29 +0.7
5,180,026 - Psyr_4327 0.29 +0.4
5,180,067 + Psyr_4327 0.40 +0.9
5,180,067 + Psyr_4327 0.40 -0.1
5,180,067 + Psyr_4327 0.40 -1.4
5,180,067 + Psyr_4327 0.40 +0.6
5,180,068 - Psyr_4327 0.40 +1.3
5,180,068 - Psyr_4327 0.40 +0.5
5,180,068 - Psyr_4327 0.40 +0.2
5,180,068 - Psyr_4327 0.40 -0.3
5,180,068 - Psyr_4327 0.40 +0.2
5,180,404 + +1.9

Or see this region's nucleotide sequence