Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4245

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
5,058,802	-		Psyr_4244	0.24	+0.3
5,058,855	-		Psyr_4244	0.28	-1.2
5,058,855	-		Psyr_4244	0.28	+0.2
5,058,981	+		Psyr_4244	0.38	+0.1
5,059,061	+		Psyr_4244	0.45	+0.6
5,059,062	-		Psyr_4244	0.45	-0.8
5,059,062	-		Psyr_4244	0.45	-1.2
5,059,062	-		Psyr_4244	0.45	+0.9
5,059,062	-		Psyr_4244	0.45	+0.1
5,059,062	-		Psyr_4244	0.45	-0.0
5,059,062	-		Psyr_4244	0.45	+0.3
5,059,082	+		Psyr_4244	0.46	-2.7
5,059,082	+		Psyr_4244	0.46	-1.9
5,059,082	+		Psyr_4244	0.46	+0.4
5,059,082	+		Psyr_4244	0.46	+1.9
5,059,082	+		Psyr_4244	0.46	-0.9
5,059,082	+		Psyr_4244	0.46	+0.9
5,059,082	+		Psyr_4244	0.46	-0.5
5,059,082	+		Psyr_4244	0.46	+0.3
5,059,083	-		Psyr_4244	0.46	-1.1
5,059,083	-		Psyr_4244	0.46	-0.2
5,059,181	+		Psyr_4244	0.54	-0.5
5,059,181	+		Psyr_4244	0.54	-0.1
5,059,181	+		Psyr_4244	0.54	-0.2
5,059,181	+		Psyr_4244	0.54	-1.0
5,059,181	+		Psyr_4244	0.54	-2.6
5,059,181	+		Psyr_4244	0.54	-1.5
5,059,181	+		Psyr_4244	0.54	+2.1
5,059,181	+		Psyr_4244	0.54	+0.7
5,059,182	-		Psyr_4244	0.54	+0.1
5,059,182	-		Psyr_4244	0.54	-0.7
5,059,182	-		Psyr_4244	0.54	+1.0
5,059,182	-		Psyr_4244	0.54	-0.7
5,059,291	+		Psyr_4244	0.63	+0.3
5,059,292	-		Psyr_4244	0.63	-2.6
5,059,292	-		Psyr_4244	0.63	-0.7
5,059,292	-		Psyr_4244	0.63	-0.4
5,059,292	-		Psyr_4244	0.63	+0.9
5,059,292	-		Psyr_4244	0.63	-0.1
5,059,363	+		Psyr_4244	0.69	+0.2
5,059,364	-		Psyr_4244	0.69	+0.4
5,059,433	+		Psyr_4244	0.75	-1.2
5,059,433	+		Psyr_4244	0.75	-0.7
5,059,434	-		Psyr_4244	0.75	-0.4
5,059,459	-		Psyr_4244	0.77	-1.3
5,059,488	+		Psyr_4244	0.79	-0.5
5,059,635	+				+0.1
5,059,702	-				+1.1
5,059,729	+				-0.5
5,059,731	+				-0.6
5,059,732	-				+0.2
5,059,732	-				-0.1
5,059,765	+				+0.1
5,059,766	-				-0.8
5,059,766	-				+0.2
5,059,889	+		Psyr_4245	0.15	+0.6
5,059,905	-		Psyr_4245	0.16	-2.4
5,060,035	+		Psyr_4245	0.29	+0.9
5,060,043	+		Psyr_4245	0.30	+0.2
5,060,043	+		Psyr_4245	0.30	+1.9
5,060,043	+		Psyr_4245	0.30	+0.3
5,060,043	+		Psyr_4245	0.30	+0.8
5,060,044	-		Psyr_4245	0.30	+0.7
5,060,044	-		Psyr_4245	0.30	-0.1
5,060,044	-		Psyr_4245	0.30	-0.5
5,060,065	+		Psyr_4245	0.32	+0.7
5,060,065	+		Psyr_4245	0.32	-0.6
5,060,182	-		Psyr_4245	0.44	+1.6
5,060,603	+		Psyr_4245	0.85	+0.6
5,060,603	+		Psyr_4245	0.85	+0.8
5,060,604	-		Psyr_4245	0.86	-1.4
5,060,604	-		Psyr_4245	0.86	+1.9
5,060,668	+				+0.4
5,060,669	-				+0.6
5,060,669	-				-0.6
5,060,730	-				-0.7
5,060,750	+				-0.0
5,060,750	+				+0.5
5,060,750	+				+0.6
5,060,751	-				-0.2
5,060,751	-				+1.2
5,060,751	-				+0.2
5,060,759	-				-0.4
5,060,759	-				-1.3
5,060,759	-				+0.5
5,060,759	-				+0.2
5,060,786	+				-0.1
5,060,808	+				+0.4
5,060,808	+				-0.2
5,060,808	+				-0.7
5,060,809	-				-1.0
5,060,809	-				-0.1
5,060,810	+				-0.9
5,060,810	+				+1.7
5,060,810	+				-0.2
5,060,810	+				-0.2
5,060,811	-				+1.0
5,060,811	-				-1.1
5,060,811	-				-1.1
5,060,811	-				-0.3
5,060,811	-				-0.3
5,060,811	-				-0.1
5,060,811	-				+0.6
5,060,881	+				+1.4
5,060,882	-				-0.8
5,060,911	+				+0.3
5,060,911	+				+0.4
5,060,911	+				+1.3
5,060,911	+				+1.1
5,060,912	-				+2.8
5,060,912	-				+0.2
5,060,912	-				-1.2
5,060,912	-				-0.3
5,060,912	-				+0.2
5,060,912	-				+0.7
5,061,014	+		Psyr_4246	0.19	+0.2
5,061,014	+		Psyr_4246	0.19	+1.9
5,061,015	-		Psyr_4246	0.19	+1.9
5,061,015	-		Psyr_4246	0.19	+0.2
5,061,015	-		Psyr_4246	0.19	+0.6
5,061,015	-		Psyr_4246	0.19	-0.4
5,061,015	-		Psyr_4246	0.19	+0.6
5,061,037	+		Psyr_4246	0.21	-0.1
5,061,037	+		Psyr_4246	0.21	+0.6
5,061,037	+		Psyr_4246	0.21	-0.0
5,061,038	-		Psyr_4246	0.22	+0.7
5,061,047	+		Psyr_4246	0.23	-0.6
5,061,047	+		Psyr_4246	0.23	-0.9
5,061,047	+		Psyr_4246	0.23	+0.8
5,061,047	+		Psyr_4246	0.23	+0.2
5,061,047	+		Psyr_4246	0.23	+0.3
5,061,047	+		Psyr_4246	0.23	+0.9
5,061,047	+		Psyr_4246	0.23	+0.2
5,061,047	+		Psyr_4246	0.23	+0.9
5,061,047	+		Psyr_4246	0.23	-0.6
5,061,047	+		Psyr_4246	0.23	+0.8
5,061,047	+		Psyr_4246	0.23	+0.3
5,061,047	+		Psyr_4246	0.23	+0.8
5,061,047	+		Psyr_4246	0.23	+1.9
5,061,047	+		Psyr_4246	0.23	+0.5
5,061,048	-		Psyr_4246	0.23	+0.5
5,061,048	-		Psyr_4246	0.23	-0.2
5,061,048	-		Psyr_4246	0.23	-0.4
5,061,048	-		Psyr_4246	0.23	+0.4
5,061,048	-		Psyr_4246	0.23	-1.1
5,061,048	-		Psyr_4246	0.23	-0.1
5,061,048	-		Psyr_4246	0.23	-1.0
5,061,067	-		Psyr_4246	0.25	-0.2
5,061,236	+		Psyr_4246	0.46	-0.4
5,061,237	-		Psyr_4246	0.46	-0.8
5,061,237	-		Psyr_4246	0.46	+0.6
5,061,256	-		Psyr_4246	0.49	-0.8
5,061,279	+		Psyr_4246	0.51	-0.3
5,061,279	+		Psyr_4246	0.51	-0.8
5,061,279	+		Psyr_4246	0.51	-0.7
5,061,280	-		Psyr_4246	0.51	-0.1
5,061,280	-		Psyr_4246	0.51	-0.1
5,061,280	-		Psyr_4246	0.51	+1.5
5,061,300	+		Psyr_4246	0.54	-0.3
5,061,313	-		Psyr_4246	0.56	+0.9
5,061,313	-		Psyr_4246	0.56	-0.2
5,061,460	+		Psyr_4246	0.74	+0.3
5,061,461	-		Psyr_4246	0.74	+1.4
5,061,461	-		Psyr_4246	0.74	+0.1
5,061,499	+		Psyr_4246	0.79	-0.4
5,061,500	-		Psyr_4246	0.79	+0.4
5,061,555	-		Psyr_4246	0.85	+0.2
5,061,555	-		Psyr_4246	0.85	+0.9
5,061,558	+		Psyr_4246	0.86	+1.2
5,061,558	+		Psyr_4246	0.86	-0.1
5,061,558	+		Psyr_4246	0.86	-0.1
5,061,559	-		Psyr_4246	0.86	-1.5
5,061,559	-		Psyr_4246	0.86	-1.0
5,061,559	-		Psyr_4246	0.86	-0.8
5,061,559	-		Psyr_4246	0.86	+1.3
5,061,602	+				+0.5
5,061,602	+				-1.7
5,061,718	+				+0.9
5,061,719	-				+0.2
5,061,721	-				-0.4
5,061,741	+				-0.2
5,061,741	+				+0.1
5,061,742	-				+0.5
5,061,742	-				-0.5
5,061,742	-				-2.9
5,061,742	-				+0.2
5,061,742	-				+0.1