Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4202 and Psyr_4203 are separated by 80 nucleotides Psyr_4203 and Psyr_4204 are separated by 307 nucleotides
Psyr_4202: Psyr_4202 - Sodium:neurotransmitter symporter, at 4,997,122 to 4,998,558
_4202
Psyr_4203: Psyr_4203 - SsrA-binding protein, at 4,998,639 to 4,999,121
_4203
Psyr_4204: Psyr_4204 - conserved hypothetical protein, at 4,999,429 to 4,999,713
_4204
Position (kb) 4998
4999
5000 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4997.786 kb on + strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.787 kb on - strand, within Psyr_4202 at 4997.787 kb on - strand, within Psyr_4202 at 4997.787 kb on - strand, within Psyr_4202 at 4997.787 kb on - strand, within Psyr_4202 at 4998.101 kb on + strand, within Psyr_4202 at 4998.102 kb on - strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.189 kb on + strand, within Psyr_4202 at 4998.189 kb on + strand, within Psyr_4202 at 4998.189 kb on + strand, within Psyr_4202 at 4998.189 kb on + strand, within Psyr_4202 at 4998.190 kb on - strand, within Psyr_4202 at 4998.190 kb on - strand, within Psyr_4202 at 4998.190 kb on - strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.192 kb on - strand, within Psyr_4202 at 4998.192 kb on - strand, within Psyr_4202 at 4998.192 kb on - strand, within Psyr_4202 at 4998.382 kb on + strand, within Psyr_4202 at 4998.382 kb on + strand, within Psyr_4202 at 4998.383 kb on - strand, within Psyr_4202 at 4998.417 kb on - strand at 4998.417 kb on - strand at 4998.624 kb on + strand at 4998.624 kb on + strand at 4998.624 kb on + strand at 4998.624 kb on + strand at 4998.625 kb on - strand at 4998.626 kb on + strand at 4998.626 kb on + strand at 4998.626 kb on + strand at 4998.683 kb on + strand at 4998.702 kb on + strand, within Psyr_4203 at 4998.702 kb on + strand, within Psyr_4203 at 4998.779 kb on - strand, within Psyr_4203 at 4998.795 kb on + strand, within Psyr_4203 at 4998.796 kb on - strand, within Psyr_4203 at 4998.796 kb on - strand, within Psyr_4203 at 4999.119 kb on + strand at 4999.119 kb on + strand at 4999.120 kb on - strand at 4999.174 kb on + strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.179 kb on - strand at 4999.179 kb on - strand at 4999.280 kb on + strand at 4999.281 kb on - strand at 4999.291 kb on - strand at 4999.306 kb on + strand at 4999.306 kb on + strand at 4999.306 kb on + strand at 4999.307 kb on - strand at 4999.307 kb on - strand at 4999.414 kb on + strand at 4999.414 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.548 kb on + strand, within Psyr_4204 at 4999.548 kb on + strand, within Psyr_4204 at 4999.711 kb on + strand at 4999.711 kb on + strand at 4999.712 kb on - strand at 4999.712 kb on - strand at 4999.887 kb on + strand at 4999.909 kb on + strand at 4999.911 kb on + strand at 5000.015 kb on + strand at 5000.037 kb on + strand at 5000.037 kb on + strand at 5000.055 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.058 kb on + strand at 5000.059 kb on - strand at 5000.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 4,997,786 + Psyr_4202 0.46 +0.5 4,997,786 + Psyr_4202 0.46 +0.9 4,997,786 + Psyr_4202 0.46 +0.9 4,997,786 + Psyr_4202 0.46 -0.6 4,997,786 + Psyr_4202 0.46 -0.1 4,997,786 + Psyr_4202 0.46 +0.2 4,997,787 - Psyr_4202 0.46 -0.2 4,997,787 - Psyr_4202 0.46 -0.7 4,997,787 - Psyr_4202 0.46 +0.1 4,997,787 - Psyr_4202 0.46 +0.6 4,998,101 + Psyr_4202 0.68 -0.3 4,998,102 - Psyr_4202 0.68 +0.0 4,998,161 + Psyr_4202 0.72 +0.3 4,998,161 + Psyr_4202 0.72 +0.7 4,998,161 + Psyr_4202 0.72 -1.7 4,998,161 + Psyr_4202 0.72 -0.1 4,998,161 + Psyr_4202 0.72 -0.5 4,998,161 + Psyr_4202 0.72 +0.7 4,998,162 - Psyr_4202 0.72 -0.3 4,998,162 - Psyr_4202 0.72 -1.0 4,998,162 - Psyr_4202 0.72 +0.9 4,998,162 - Psyr_4202 0.72 -0.7 4,998,162 - Psyr_4202 0.72 +0.3 4,998,162 - Psyr_4202 0.72 +0.5 4,998,162 - Psyr_4202 0.72 +0.3 4,998,162 - Psyr_4202 0.72 -0.2 4,998,189 + Psyr_4202 0.74 -0.3 4,998,189 + Psyr_4202 0.74 -0.1 4,998,189 + Psyr_4202 0.74 -0.2 4,998,189 + Psyr_4202 0.74 +0.6 4,998,190 - Psyr_4202 0.74 -0.1 4,998,190 - Psyr_4202 0.74 +0.5 4,998,190 - Psyr_4202 0.74 +0.3 4,998,191 + Psyr_4202 0.74 +0.3 4,998,191 + Psyr_4202 0.74 +0.9 4,998,191 + Psyr_4202 0.74 +0.2 4,998,191 + Psyr_4202 0.74 -0.7 4,998,191 + Psyr_4202 0.74 +0.4 4,998,191 + Psyr_4202 0.74 +0.2 4,998,191 + Psyr_4202 0.74 +0.1 4,998,191 + Psyr_4202 0.74 -1.1 4,998,192 - Psyr_4202 0.74 +1.2 4,998,192 - Psyr_4202 0.74 +0.3 4,998,192 - Psyr_4202 0.74 -0.2 4,998,382 + Psyr_4202 0.88 -1.0 4,998,382 + Psyr_4202 0.88 -0.1 4,998,383 - Psyr_4202 0.88 +0.4 4,998,417 - -0.7 4,998,417 - -0.3 4,998,624 + -0.2 4,998,624 + +0.4 4,998,624 + -0.9 4,998,624 + -2.3 4,998,625 - -2.1 4,998,626 + -1.0 4,998,626 + -2.9 4,998,626 + -1.1 4,998,683 + +0.3 4,998,702 + Psyr_4203 0.13 -2.1 4,998,702 + Psyr_4203 0.13 -1.9 4,998,779 - Psyr_4203 0.29 -1.4 4,998,795 + Psyr_4203 0.32 -0.1 4,998,796 - Psyr_4203 0.33 -0.7 4,998,796 - Psyr_4203 0.33 -0.7 4,999,119 + -0.0 4,999,119 + +0.0 4,999,120 - +0.9 4,999,174 + -2.1 4,999,175 - -0.3 4,999,175 - +0.9 4,999,175 - +0.1 4,999,175 - +0.1 4,999,175 - -1.1 4,999,175 - +0.6 4,999,175 - +0.3 4,999,175 - -0.1 4,999,175 - -0.8 4,999,179 - -0.5 4,999,179 - -0.4 4,999,280 + +1.6 4,999,281 - +0.3 4,999,291 - +2.5 4,999,306 + -1.4 4,999,306 + -0.5 4,999,306 + -0.2 4,999,307 - -0.4 4,999,307 - +0.9 4,999,414 + +2.2 4,999,414 + +0.2 4,999,428 + -0.1 4,999,428 + -1.1 4,999,428 + +1.9 4,999,428 + +1.6 4,999,428 + +0.0 4,999,428 + -0.7 4,999,428 + +1.6 4,999,428 + -2.0 4,999,428 + +0.7 4,999,428 + -0.4 4,999,428 + +1.2 4,999,428 + +1.2 4,999,428 + -0.3 4,999,428 + +1.3 4,999,428 + +0.3 4,999,428 + -0.1 4,999,428 + -0.0 4,999,429 - +0.5 4,999,429 - -0.7 4,999,429 - +0.2 4,999,429 - +0.4 4,999,429 - +0.3 4,999,429 - +0.0 4,999,429 - +0.2 4,999,429 - +3.2 4,999,429 - +1.9 4,999,429 - -0.1 4,999,429 - +1.5 4,999,429 - -1.9 4,999,429 - +0.3 4,999,429 - +0.5 4,999,429 - +0.9 4,999,429 - +0.5 4,999,429 - -0.1 4,999,429 - -0.0 4,999,429 - -0.9 4,999,548 + Psyr_4204 0.42 -1.1 4,999,548 + Psyr_4204 0.42 -0.3 4,999,711 + +0.6 4,999,711 + +0.3 4,999,712 - -0.7 4,999,712 - +0.2 4,999,887 + -0.7 4,999,909 + -0.1 4,999,911 + +0.9 5,000,015 + -0.7 5,000,037 + -0.9 5,000,037 + -0.1 5,000,055 + -1.9 5,000,058 + -0.3 5,000,058 + +0.6 5,000,058 + -1.1 5,000,058 + +0.3 5,000,058 + -1.1 5,000,058 + -0.7 5,000,058 + -0.7 5,000,059 - -2.1 5,000,059 - -1.4
Or see this region's nucleotide sequence