Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4139 and Psyr_4140 overlap by 1 nucleotides Psyr_4140 and Psyr_4141 overlap by 1 nucleotides Psyr_4141 and Psyr_4142 are separated by 304 nucleotides
Psyr_4139: Psyr_4139 - Mce4/Rv3499c/MTV023.06c protein, at 4,928,661 to 4,929,128
_4139
Psyr_4140: Psyr_4140 - Protein of unknown function DUF140, at 4,929,128 to 4,929,925
_4140
Psyr_4141: Psyr_4141 - ABC transporter, at 4,929,925 to 4,930,734
_4141
Psyr_4142: Psyr_4142 - KpsF/GutQ, at 4,931,039 to 4,932,013
_4142
Position (kb) 4929
4930
4931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4928.955 kb on + strand, within Psyr_4139 at 4928.955 kb on + strand, within Psyr_4139 at 4928.955 kb on + strand, within Psyr_4139 at 4928.955 kb on + strand, within Psyr_4139 at 4928.956 kb on - strand, within Psyr_4139 at 4928.956 kb on - strand, within Psyr_4139 at 4928.995 kb on + strand, within Psyr_4139 at 4928.995 kb on + strand, within Psyr_4139 at 4928.995 kb on + strand, within Psyr_4139 at 4928.995 kb on + strand, within Psyr_4139 at 4928.996 kb on - strand, within Psyr_4139 at 4928.996 kb on - strand, within Psyr_4139 at 4929.001 kb on + strand, within Psyr_4139 at 4929.002 kb on - strand, within Psyr_4139 at 4929.008 kb on + strand, within Psyr_4139 at 4929.011 kb on - strand, within Psyr_4139 at 4929.011 kb on - strand, within Psyr_4139 at 4929.011 kb on - strand, within Psyr_4139 at 4929.290 kb on + strand, within Psyr_4140 at 4929.290 kb on + strand, within Psyr_4140 at 4929.290 kb on + strand, within Psyr_4140 at 4929.372 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.863 kb on - strand at 4929.868 kb on + strand at 4929.869 kb on - strand at 4929.916 kb on + strand at 4929.916 kb on + strand at 4929.917 kb on - strand at 4929.940 kb on + strand at 4929.940 kb on + strand at 4929.940 kb on + strand at 4929.941 kb on - strand at 4929.941 kb on - strand at 4930.017 kb on + strand, within Psyr_4141 at 4930.017 kb on + strand, within Psyr_4141 at 4930.017 kb on + strand, within Psyr_4141 at 4930.017 kb on + strand, within Psyr_4141 at 4930.088 kb on + strand, within Psyr_4141 at 4930.088 kb on + strand, within Psyr_4141 at 4930.088 kb on + strand, within Psyr_4141 at 4930.088 kb on + strand, within Psyr_4141 at 4930.088 kb on + strand, within Psyr_4141 at 4930.088 kb on + strand, within Psyr_4141 at 4930.088 kb on + strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.232 kb on + strand, within Psyr_4141 at 4930.232 kb on + strand, within Psyr_4141 at 4930.232 kb on + strand, within Psyr_4141 at 4930.232 kb on + strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.511 kb on - strand, within Psyr_4141 at 4930.651 kb on - strand, within Psyr_4141 at 4930.737 kb on - strand at 4930.737 kb on - strand at 4930.737 kb on - strand at 4930.737 kb on - strand at 4930.737 kb on - strand at 4930.737 kb on - strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.824 kb on - strand at 4930.824 kb on - strand at 4930.824 kb on - strand at 4930.824 kb on - strand at 4930.825 kb on + strand at 4930.826 kb on - strand at 4930.826 kb on - strand at 4930.826 kb on - strand at 4930.826 kb on - strand at 4930.826 kb on - strand at 4930.872 kb on + strand at 4930.885 kb on - strand at 4930.902 kb on + strand at 4930.934 kb on + strand at 4930.934 kb on + strand at 4930.934 kb on + strand at 4930.934 kb on + strand at 4930.934 kb on + strand at 4930.934 kb on + strand at 4930.935 kb on - strand at 4930.935 kb on - strand at 4930.935 kb on - strand at 4930.935 kb on - strand at 4930.935 kb on - strand at 4930.938 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 4,928,955 + Psyr_4139 0.63 +2.1 4,928,955 + Psyr_4139 0.63 -0.1 4,928,955 + Psyr_4139 0.63 +0.3 4,928,955 + Psyr_4139 0.63 -0.5 4,928,956 - Psyr_4139 0.63 +1.1 4,928,956 - Psyr_4139 0.63 +1.2 4,928,995 + Psyr_4139 0.71 -1.3 4,928,995 + Psyr_4139 0.71 -1.7 4,928,995 + Psyr_4139 0.71 +0.2 4,928,995 + Psyr_4139 0.71 -1.1 4,928,996 - Psyr_4139 0.72 -0.7 4,928,996 - Psyr_4139 0.72 -0.6 4,929,001 + Psyr_4139 0.73 -1.5 4,929,002 - Psyr_4139 0.73 -0.6 4,929,008 + Psyr_4139 0.74 -0.9 4,929,011 - Psyr_4139 0.75 +0.3 4,929,011 - Psyr_4139 0.75 -0.5 4,929,011 - Psyr_4139 0.75 -1.5 4,929,290 + Psyr_4140 0.20 +0.4 4,929,290 + Psyr_4140 0.20 -2.8 4,929,290 + Psyr_4140 0.20 +1.2 4,929,372 + Psyr_4140 0.31 -0.2 4,929,489 + Psyr_4140 0.45 -1.5 4,929,489 + Psyr_4140 0.45 -0.9 4,929,863 - -0.7 4,929,868 + -0.1 4,929,869 - -1.1 4,929,916 + +1.3 4,929,916 + -0.9 4,929,917 - -0.7 4,929,940 + -1.5 4,929,940 + -1.7 4,929,940 + +0.1 4,929,941 - -0.3 4,929,941 - -0.4 4,930,017 + Psyr_4141 0.11 +0.9 4,930,017 + Psyr_4141 0.11 -2.8 4,930,017 + Psyr_4141 0.11 -0.9 4,930,017 + Psyr_4141 0.11 -1.5 4,930,088 + Psyr_4141 0.20 +0.4 4,930,088 + Psyr_4141 0.20 -0.1 4,930,088 + Psyr_4141 0.20 -0.1 4,930,088 + Psyr_4141 0.20 -0.5 4,930,088 + Psyr_4141 0.20 -0.7 4,930,088 + Psyr_4141 0.20 -1.1 4,930,088 + Psyr_4141 0.20 -0.7 4,930,089 - Psyr_4141 0.20 +0.9 4,930,089 - Psyr_4141 0.20 -0.7 4,930,089 - Psyr_4141 0.20 -0.4 4,930,232 + Psyr_4141 0.38 +0.1 4,930,232 + Psyr_4141 0.38 -1.1 4,930,232 + Psyr_4141 0.38 -1.1 4,930,232 + Psyr_4141 0.38 -0.5 4,930,233 - Psyr_4141 0.38 -2.5 4,930,233 - Psyr_4141 0.38 +0.9 4,930,233 - Psyr_4141 0.38 -0.1 4,930,233 - Psyr_4141 0.38 -3.0 4,930,233 - Psyr_4141 0.38 +0.1 4,930,511 - Psyr_4141 0.72 +0.3 4,930,651 - Psyr_4141 0.90 +0.3 4,930,737 - -0.1 4,930,737 - +0.7 4,930,737 - -1.9 4,930,737 - -0.3 4,930,737 - -1.5 4,930,737 - -0.5 4,930,823 + -0.3 4,930,823 + +1.5 4,930,823 + +1.3 4,930,823 + -0.3 4,930,823 + -0.9 4,930,824 - -0.5 4,930,824 - -1.5 4,930,824 - +0.7 4,930,824 - -0.1 4,930,825 + -1.5 4,930,826 - -0.2 4,930,826 - -1.9 4,930,826 - -0.2 4,930,826 - +0.8 4,930,826 - +0.2 4,930,872 + -1.3 4,930,885 - +0.3 4,930,902 + +0.7 4,930,934 + -1.9 4,930,934 + -1.6 4,930,934 + +0.3 4,930,934 + -0.3 4,930,934 + +1.5 4,930,934 + +0.4 4,930,935 - +0.2 4,930,935 - -0.7 4,930,935 - +0.9 4,930,935 - -1.5 4,930,935 - +0.9 4,930,938 + +0.0
Or see this region's nucleotide sequence