Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4116 and Psyr_4117 are separated by 60 nucleotides Psyr_4117 and Psyr_4118 are separated by 17 nucleotides Psyr_4118 and Psyr_4119 are separated by 281 nucleotides Psyr_4119 and Psyr_4120 are separated by 14 nucleotides
Psyr_4116: Psyr_4116 - Transport-associated protein, at 4,906,715 to 4,907,293
_4116
Psyr_4117: Psyr_4117 - Stringent starvation protein B, at 4,907,354 to 4,907,773
_4117
Psyr_4118: Psyr_4118 - Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal, at 4,907,791 to 4,908,408
_4118
Psyr_4119: Psyr_4119 - SSU ribosomal protein S9P, at 4,908,690 to 4,909,082
_4119
Psyr_4120: Psyr_4120 - LSU ribosomal protein L13P, at 4,909,097 to 4,909,525
_4120
Position (kb) 4907
4908
4909 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4907.163 kb on + strand, within Psyr_4116 at 4907.164 kb on - strand, within Psyr_4116 at 4907.282 kb on + strand at 4907.282 kb on + strand at 4907.282 kb on + strand at 4907.282 kb on + strand at 4907.282 kb on + strand at 4907.282 kb on + strand at 4907.282 kb on + strand at 4907.282 kb on + strand at 4907.283 kb on - strand at 4907.283 kb on - strand at 4907.283 kb on - strand at 4907.341 kb on + strand at 4907.508 kb on + strand, within Psyr_4117 at 4907.508 kb on + strand, within Psyr_4117 at 4907.508 kb on + strand, within Psyr_4117 at 4907.509 kb on - strand, within Psyr_4117 at 4907.509 kb on - strand, within Psyr_4117 at 4907.509 kb on - strand, within Psyr_4117 at 4907.512 kb on + strand, within Psyr_4117 at 4907.534 kb on + strand, within Psyr_4117 at 4907.534 kb on + strand, within Psyr_4117 at 4907.534 kb on + strand, within Psyr_4117 at 4907.535 kb on - strand, within Psyr_4117 at 4907.535 kb on - strand, within Psyr_4117 at 4907.538 kb on + strand, within Psyr_4117 at 4907.539 kb on - strand, within Psyr_4117 at 4907.539 kb on - strand, within Psyr_4117 at 4907.539 kb on - strand, within Psyr_4117 at 4907.539 kb on - strand, within Psyr_4117 at 4907.539 kb on - strand, within Psyr_4117 at 4907.596 kb on + strand, within Psyr_4117 at 4907.596 kb on + strand, within Psyr_4117 at 4907.597 kb on - strand, within Psyr_4117 at 4907.736 kb on + strand at 4907.736 kb on + strand at 4907.736 kb on + strand at 4907.736 kb on + strand at 4907.737 kb on - strand at 4907.737 kb on - strand at 4907.754 kb on + strand at 4907.861 kb on + strand, within Psyr_4118 at 4907.861 kb on + strand, within Psyr_4118 at 4907.861 kb on + strand, within Psyr_4118 at 4907.861 kb on + strand, within Psyr_4118 at 4907.861 kb on + strand, within Psyr_4118 at 4907.862 kb on - strand, within Psyr_4118 at 4907.862 kb on - strand, within Psyr_4118 at 4907.862 kb on - strand, within Psyr_4118 at 4907.862 kb on - strand, within Psyr_4118 at 4907.862 kb on - strand, within Psyr_4118 at 4907.862 kb on - strand, within Psyr_4118 at 4907.862 kb on - strand, within Psyr_4118 at 4907.932 kb on + strand, within Psyr_4118 at 4907.953 kb on + strand, within Psyr_4118 at 4907.953 kb on + strand, within Psyr_4118 at 4907.954 kb on - strand, within Psyr_4118 at 4907.954 kb on - strand, within Psyr_4118 at 4907.954 kb on - strand, within Psyr_4118 at 4907.954 kb on - strand, within Psyr_4118 at 4907.954 kb on - strand, within Psyr_4118 at 4907.954 kb on - strand, within Psyr_4118 at 4907.954 kb on - strand, within Psyr_4118 at 4908.126 kb on + strand, within Psyr_4118 at 4908.188 kb on + strand, within Psyr_4118 at 4908.212 kb on + strand, within Psyr_4118 at 4908.212 kb on + strand, within Psyr_4118 at 4908.212 kb on + strand, within Psyr_4118 at 4908.213 kb on - strand, within Psyr_4118 at 4908.213 kb on - strand, within Psyr_4118 at 4908.262 kb on + strand, within Psyr_4118 at 4908.263 kb on - strand, within Psyr_4118 at 4908.518 kb on + strand at 4908.519 kb on - strand at 4908.527 kb on + strand at 4908.528 kb on - strand at 4908.536 kb on + strand at 4908.578 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 4,907,163 + Psyr_4116 0.77 -0.1 4,907,164 - Psyr_4116 0.78 +0.7 4,907,282 + +0.8 4,907,282 + +0.2 4,907,282 + +0.9 4,907,282 + +0.2 4,907,282 + +0.6 4,907,282 + -1.0 4,907,282 + +0.3 4,907,282 + +0.1 4,907,283 - -0.7 4,907,283 - +2.1 4,907,283 - -0.6 4,907,341 + -2.3 4,907,508 + Psyr_4117 0.37 -0.1 4,907,508 + Psyr_4117 0.37 -0.6 4,907,508 + Psyr_4117 0.37 +0.5 4,907,509 - Psyr_4117 0.37 -0.1 4,907,509 - Psyr_4117 0.37 +0.6 4,907,509 - Psyr_4117 0.37 -0.1 4,907,512 + Psyr_4117 0.38 +1.4 4,907,534 + Psyr_4117 0.43 -1.1 4,907,534 + Psyr_4117 0.43 -0.9 4,907,534 + Psyr_4117 0.43 -1.0 4,907,535 - Psyr_4117 0.43 +0.2 4,907,535 - Psyr_4117 0.43 -1.1 4,907,538 + Psyr_4117 0.44 -1.1 4,907,539 - Psyr_4117 0.44 +0.1 4,907,539 - Psyr_4117 0.44 +0.0 4,907,539 - Psyr_4117 0.44 -1.5 4,907,539 - Psyr_4117 0.44 +0.3 4,907,539 - Psyr_4117 0.44 +0.3 4,907,596 + Psyr_4117 0.58 -0.5 4,907,596 + Psyr_4117 0.58 +0.1 4,907,597 - Psyr_4117 0.58 +1.2 4,907,736 + -0.7 4,907,736 + +0.4 4,907,736 + -0.8 4,907,736 + -0.9 4,907,737 - -0.1 4,907,737 - -0.6 4,907,754 + -1.0 4,907,861 + Psyr_4118 0.11 -3.3 4,907,861 + Psyr_4118 0.11 -1.7 4,907,861 + Psyr_4118 0.11 -2.2 4,907,861 + Psyr_4118 0.11 -1.3 4,907,861 + Psyr_4118 0.11 -2.2 4,907,862 - Psyr_4118 0.11 -0.1 4,907,862 - Psyr_4118 0.11 +0.4 4,907,862 - Psyr_4118 0.11 -0.9 4,907,862 - Psyr_4118 0.11 -1.0 4,907,862 - Psyr_4118 0.11 +0.9 4,907,862 - Psyr_4118 0.11 -0.9 4,907,862 - Psyr_4118 0.11 -0.7 4,907,932 + Psyr_4118 0.23 -0.1 4,907,953 + Psyr_4118 0.26 -1.9 4,907,953 + Psyr_4118 0.26 -1.6 4,907,954 - Psyr_4118 0.26 -0.8 4,907,954 - Psyr_4118 0.26 -0.6 4,907,954 - Psyr_4118 0.26 +0.6 4,907,954 - Psyr_4118 0.26 -0.2 4,907,954 - Psyr_4118 0.26 -0.7 4,907,954 - Psyr_4118 0.26 +1.6 4,907,954 - Psyr_4118 0.26 -0.1 4,908,126 + Psyr_4118 0.54 -1.5 4,908,188 + Psyr_4118 0.64 +0.4 4,908,212 + Psyr_4118 0.68 +0.9 4,908,212 + Psyr_4118 0.68 +0.3 4,908,212 + Psyr_4118 0.68 -0.1 4,908,213 - Psyr_4118 0.68 +0.9 4,908,213 - Psyr_4118 0.68 -1.5 4,908,262 + Psyr_4118 0.76 -1.7 4,908,263 - Psyr_4118 0.76 -2.3 4,908,518 + -1.3 4,908,519 - +0.1 4,908,527 + +0.5 4,908,528 - -0.1 4,908,536 + -3.3 4,908,578 + -1.0
Or see this region's nucleotide sequence