Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4088 and Psyr_4089 are separated by 44 nucleotides Psyr_4089 and Psyr_4090 are separated by 15 nucleotides Psyr_4090 and Psyr_4091 are separated by 261 nucleotides
Psyr_4088: Psyr_4088 - ketopantoate reductase, at 4,873,624 to 4,874,544
_4088
Psyr_4089: Psyr_4089 - PAS, at 4,874,589 to 4,876,625
_4089
Psyr_4090: Psyr_4090 - ATP:cob(I)alamin adenosyltransferase, at 4,876,641 to 4,877,219
_4090
Psyr_4091: Psyr_4091 - 8-oxo-dGTPase, at 4,877,481 to 4,878,431
_4091
Position (kb) 4874
4875
4876
4877 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4873.867 kb on + strand, within Psyr_4088 at 4873.976 kb on + strand, within Psyr_4088 at 4874.081 kb on + strand, within Psyr_4088 at 4874.081 kb on + strand, within Psyr_4088 at 4874.082 kb on - strand, within Psyr_4088 at 4874.082 kb on - strand, within Psyr_4088 at 4874.374 kb on + strand, within Psyr_4088 at 4874.374 kb on + strand, within Psyr_4088 at 4874.375 kb on - strand, within Psyr_4088 at 4874.375 kb on - strand, within Psyr_4088 at 4874.375 kb on - strand, within Psyr_4088 at 4874.375 kb on - strand, within Psyr_4088 at 4874.386 kb on + strand, within Psyr_4088 at 4874.386 kb on + strand, within Psyr_4088 at 4874.386 kb on + strand, within Psyr_4088 at 4874.425 kb on + strand, within Psyr_4088 at 4874.567 kb on - strand at 4874.668 kb on + strand at 4874.709 kb on + strand at 4874.709 kb on + strand at 4874.709 kb on + strand at 4874.709 kb on + strand at 4874.710 kb on - strand at 4874.710 kb on - strand at 4874.710 kb on - strand at 4874.710 kb on - strand at 4874.796 kb on + strand, within Psyr_4089 at 4874.796 kb on + strand, within Psyr_4089 at 4874.868 kb on + strand, within Psyr_4089 at 4874.869 kb on - strand, within Psyr_4089 at 4874.948 kb on + strand, within Psyr_4089 at 4874.949 kb on - strand, within Psyr_4089 at 4875.061 kb on - strand, within Psyr_4089 at 4875.162 kb on + strand, within Psyr_4089 at 4875.162 kb on + strand, within Psyr_4089 at 4875.163 kb on - strand, within Psyr_4089 at 4875.207 kb on + strand, within Psyr_4089 at 4875.208 kb on - strand, within Psyr_4089 at 4875.270 kb on - strand, within Psyr_4089 at 4875.340 kb on - strand, within Psyr_4089 at 4875.340 kb on - strand, within Psyr_4089 at 4875.340 kb on - strand, within Psyr_4089 at 4875.451 kb on - strand, within Psyr_4089 at 4875.510 kb on + strand, within Psyr_4089 at 4875.510 kb on + strand, within Psyr_4089 at 4875.510 kb on + strand, within Psyr_4089 at 4875.510 kb on + strand, within Psyr_4089 at 4875.510 kb on + strand, within Psyr_4089 at 4875.511 kb on - strand, within Psyr_4089 at 4875.511 kb on - strand, within Psyr_4089 at 4875.702 kb on + strand, within Psyr_4089 at 4875.782 kb on - strand, within Psyr_4089 at 4875.892 kb on + strand, within Psyr_4089 at 4875.892 kb on + strand, within Psyr_4089 at 4875.893 kb on - strand, within Psyr_4089 at 4875.893 kb on - strand, within Psyr_4089 at 4875.901 kb on + strand, within Psyr_4089 at 4875.901 kb on + strand, within Psyr_4089 at 4875.901 kb on + strand, within Psyr_4089 at 4875.902 kb on - strand, within Psyr_4089 at 4875.902 kb on - strand, within Psyr_4089 at 4875.902 kb on - strand, within Psyr_4089 at 4875.902 kb on - strand, within Psyr_4089 at 4875.902 kb on - strand, within Psyr_4089 at 4876.528 kb on + strand at 4876.528 kb on + strand at 4876.529 kb on - strand at 4876.665 kb on + strand at 4876.846 kb on + strand, within Psyr_4090 at 4876.846 kb on + strand, within Psyr_4090 at 4876.846 kb on + strand, within Psyr_4090 at 4876.846 kb on + strand, within Psyr_4090 at 4876.847 kb on - strand, within Psyr_4090 at 4876.847 kb on - strand, within Psyr_4090 at 4876.847 kb on - strand, within Psyr_4090 at 4876.905 kb on + strand, within Psyr_4090 at 4876.905 kb on + strand, within Psyr_4090 at 4876.905 kb on + strand, within Psyr_4090 at 4876.906 kb on - strand, within Psyr_4090 at 4876.906 kb on - strand, within Psyr_4090 at 4877.040 kb on - strand, within Psyr_4090 at 4877.115 kb on + strand, within Psyr_4090 at 4877.115 kb on + strand, within Psyr_4090 at 4877.115 kb on + strand, within Psyr_4090 at 4877.115 kb on + strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.116 kb on - strand, within Psyr_4090 at 4877.226 kb on + strand at 4877.226 kb on + strand at 4877.226 kb on + strand at 4877.226 kb on + strand at 4877.226 kb on + strand at 4877.227 kb on - strand at 4877.227 kb on - strand at 4877.227 kb on - strand at 4877.279 kb on + strand at 4877.283 kb on + strand at 4877.283 kb on + strand at 4877.284 kb on - strand at 4877.284 kb on - strand at 4877.284 kb on - strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.285 kb on + strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.286 kb on - strand at 4877.356 kb on - strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.419 kb on + strand at 4877.420 kb on - strand at 4877.420 kb on - strand at 4877.420 kb on - strand at 4877.420 kb on - strand at 4877.420 kb on - strand at 4877.427 kb on + strand at 4877.428 kb on - strand at 4877.428 kb on - strand at 4877.431 kb on + strand at 4877.431 kb on + strand at 4877.432 kb on - strand at 4877.432 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 4,873,867 + Psyr_4088 0.26 +0.4 4,873,976 + Psyr_4088 0.38 +0.9 4,874,081 + Psyr_4088 0.50 -0.5 4,874,081 + Psyr_4088 0.50 +1.0 4,874,082 - Psyr_4088 0.50 +0.9 4,874,082 - Psyr_4088 0.50 -1.1 4,874,374 + Psyr_4088 0.81 +1.9 4,874,374 + Psyr_4088 0.81 +1.2 4,874,375 - Psyr_4088 0.82 -0.6 4,874,375 - Psyr_4088 0.82 +0.4 4,874,375 - Psyr_4088 0.82 +0.5 4,874,375 - Psyr_4088 0.82 -0.1 4,874,386 + Psyr_4088 0.83 +1.0 4,874,386 + Psyr_4088 0.83 -0.0 4,874,386 + Psyr_4088 0.83 -0.4 4,874,425 + Psyr_4088 0.87 +1.4 4,874,567 - -0.9 4,874,668 + +0.1 4,874,709 + -0.7 4,874,709 + -0.7 4,874,709 + -0.5 4,874,709 + -1.5 4,874,710 - -0.1 4,874,710 - -0.4 4,874,710 - -2.7 4,874,710 - -0.7 4,874,796 + Psyr_4089 0.10 +0.9 4,874,796 + Psyr_4089 0.10 -1.1 4,874,868 + Psyr_4089 0.14 -0.7 4,874,869 - Psyr_4089 0.14 -1.0 4,874,948 + Psyr_4089 0.18 +1.9 4,874,949 - Psyr_4089 0.18 -0.5 4,875,061 - Psyr_4089 0.23 +0.3 4,875,162 + Psyr_4089 0.28 -2.5 4,875,162 + Psyr_4089 0.28 -0.4 4,875,163 - Psyr_4089 0.28 -1.1 4,875,207 + Psyr_4089 0.30 -1.1 4,875,208 - Psyr_4089 0.30 +0.9 4,875,270 - Psyr_4089 0.33 -1.1 4,875,340 - Psyr_4089 0.37 +1.7 4,875,340 - Psyr_4089 0.37 -1.0 4,875,340 - Psyr_4089 0.37 -1.6 4,875,451 - Psyr_4089 0.42 -0.0 4,875,510 + Psyr_4089 0.45 +1.3 4,875,510 + Psyr_4089 0.45 -1.1 4,875,510 + Psyr_4089 0.45 -0.9 4,875,510 + Psyr_4089 0.45 +0.9 4,875,510 + Psyr_4089 0.45 -1.5 4,875,511 - Psyr_4089 0.45 -0.4 4,875,511 - Psyr_4089 0.45 -2.1 4,875,702 + Psyr_4089 0.55 -0.7 4,875,782 - Psyr_4089 0.59 +1.9 4,875,892 + Psyr_4089 0.64 +0.9 4,875,892 + Psyr_4089 0.64 -1.1 4,875,893 - Psyr_4089 0.64 -0.1 4,875,893 - Psyr_4089 0.64 -0.7 4,875,901 + Psyr_4089 0.64 +0.9 4,875,901 + Psyr_4089 0.64 -1.1 4,875,901 + Psyr_4089 0.64 -0.7 4,875,902 - Psyr_4089 0.64 -0.5 4,875,902 - Psyr_4089 0.64 -2.0 4,875,902 - Psyr_4089 0.64 -0.7 4,875,902 - Psyr_4089 0.64 -0.1 4,875,902 - Psyr_4089 0.64 +0.9 4,876,528 + +0.9 4,876,528 + -0.4 4,876,529 - +0.0 4,876,665 + -0.4 4,876,846 + Psyr_4090 0.35 -0.1 4,876,846 + Psyr_4090 0.35 -0.1 4,876,846 + Psyr_4090 0.35 +0.9 4,876,846 + Psyr_4090 0.35 -0.4 4,876,847 - Psyr_4090 0.36 +0.2 4,876,847 - Psyr_4090 0.36 -0.1 4,876,847 - Psyr_4090 0.36 -1.4 4,876,905 + Psyr_4090 0.46 +1.2 4,876,905 + Psyr_4090 0.46 -0.1 4,876,905 + Psyr_4090 0.46 +0.9 4,876,906 - Psyr_4090 0.46 -0.7 4,876,906 - Psyr_4090 0.46 +0.3 4,877,040 - Psyr_4090 0.69 -0.3 4,877,115 + Psyr_4090 0.82 +0.3 4,877,115 + Psyr_4090 0.82 -0.1 4,877,115 + Psyr_4090 0.82 +0.7 4,877,115 + Psyr_4090 0.82 +0.5 4,877,116 - Psyr_4090 0.82 +0.4 4,877,116 - Psyr_4090 0.82 +1.6 4,877,116 - Psyr_4090 0.82 +0.4 4,877,116 - Psyr_4090 0.82 +0.3 4,877,116 - Psyr_4090 0.82 -0.0 4,877,226 + -0.3 4,877,226 + +0.3 4,877,226 + -0.5 4,877,226 + -0.7 4,877,226 + +1.6 4,877,227 - +1.0 4,877,227 - -2.4 4,877,227 - -0.5 4,877,279 + +0.9 4,877,283 + +0.0 4,877,283 + -2.1 4,877,284 - -0.1 4,877,284 - -0.1 4,877,284 - -1.5 4,877,285 + +2.3 4,877,285 + +0.4 4,877,285 + +0.1 4,877,285 + -0.1 4,877,285 + +0.5 4,877,285 + +0.9 4,877,285 + +1.0 4,877,285 + +1.3 4,877,285 + -1.0 4,877,285 + +1.7 4,877,285 + +0.6 4,877,285 + +0.9 4,877,285 + +1.6 4,877,285 + -0.1 4,877,286 - -0.1 4,877,286 - +0.1 4,877,286 - +1.9 4,877,286 - +0.9 4,877,286 - -0.6 4,877,286 - -0.1 4,877,286 - -0.5 4,877,286 - +0.3 4,877,286 - -0.1 4,877,286 - +0.0 4,877,286 - -1.5 4,877,286 - +1.9 4,877,286 - -0.1 4,877,356 - -0.4 4,877,419 + +1.7 4,877,419 + +0.6 4,877,419 + -0.2 4,877,419 + +0.3 4,877,419 + +0.3 4,877,419 + -0.2 4,877,419 + +0.3 4,877,419 + +0.1 4,877,419 + +0.6 4,877,419 + +1.3 4,877,419 + -0.5 4,877,419 + +1.1 4,877,420 - -0.1 4,877,420 - +0.5 4,877,420 - -0.4 4,877,420 - -0.5 4,877,420 - -0.3 4,877,427 + +1.5 4,877,428 - +0.4 4,877,428 - -0.1 4,877,431 + +0.0 4,877,431 + +2.7 4,877,432 - +0.1 4,877,432 - -0.4
Or see this region's nucleotide sequence