Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4057 and Psyr_4058 are separated by 95 nucleotides Psyr_4058 and Psyr_4059 are separated by 191 nucleotides Psyr_4059 and Psyr_4060 are separated by 337 nucleotides
Psyr_4057: Psyr_4057 - regulatory protein, LysR:LysR, substrate-binding protein, at 4,839,666 to 4,840,565
_4057
Psyr_4058: Psyr_4058 - Lysine exporter protein (LYSE/YGGA), at 4,840,661 to 4,841,263
_4058
Psyr_4059: Psyr_4059 - Superoxide dismutase, at 4,841,455 to 4,842,036
_4059
Psyr_4060: Psyr_4060 - diguanylate cyclase/phosphodiesterase, at 4,842,374 to 4,844,491
_4060
Position (kb) 4841
4842
4843 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4840.555 kb on + strand at 4840.605 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.656 kb on + strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.657 kb on - strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.660 kb on + strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.661 kb on - strand at 4840.674 kb on - strand at 4840.674 kb on - strand at 4840.674 kb on - strand at 4840.674 kb on - strand at 4840.792 kb on + strand, within Psyr_4058 at 4840.793 kb on - strand, within Psyr_4058 at 4840.893 kb on + strand, within Psyr_4058 at 4840.894 kb on - strand, within Psyr_4058 at 4840.894 kb on - strand, within Psyr_4058 at 4840.894 kb on - strand, within Psyr_4058 at 4840.907 kb on + strand, within Psyr_4058 at 4841.036 kb on + strand, within Psyr_4058 at 4841.036 kb on + strand, within Psyr_4058 at 4841.036 kb on + strand, within Psyr_4058 at 4841.037 kb on - strand, within Psyr_4058 at 4841.037 kb on - strand, within Psyr_4058 at 4841.037 kb on - strand, within Psyr_4058 at 4841.037 kb on - strand, within Psyr_4058 at 4841.037 kb on - strand, within Psyr_4058 at 4841.037 kb on - strand, within Psyr_4058 at 4841.037 kb on - strand, within Psyr_4058 at 4841.037 kb on - strand, within Psyr_4058 at 4841.049 kb on + strand, within Psyr_4058 at 4841.049 kb on + strand, within Psyr_4058 at 4841.049 kb on + strand, within Psyr_4058 at 4841.052 kb on + strand, within Psyr_4058 at 4841.052 kb on + strand, within Psyr_4058 at 4841.053 kb on - strand, within Psyr_4058 at 4841.053 kb on - strand, within Psyr_4058 at 4841.053 kb on - strand, within Psyr_4058 at 4841.096 kb on + strand, within Psyr_4058 at 4841.097 kb on - strand, within Psyr_4058 at 4841.097 kb on - strand, within Psyr_4058 at 4841.100 kb on + strand, within Psyr_4058 at 4841.100 kb on + strand, within Psyr_4058 at 4841.100 kb on + strand, within Psyr_4058 at 4841.100 kb on + strand, within Psyr_4058 at 4841.100 kb on + strand, within Psyr_4058 at 4841.101 kb on - strand, within Psyr_4058 at 4841.101 kb on - strand, within Psyr_4058 at 4841.101 kb on - strand, within Psyr_4058 at 4841.101 kb on - strand, within Psyr_4058 at 4841.101 kb on - strand, within Psyr_4058 at 4841.101 kb on - strand, within Psyr_4058 at 4841.101 kb on - strand, within Psyr_4058 at 4841.345 kb on + strand at 4841.345 kb on + strand at 4841.345 kb on + strand at 4841.345 kb on + strand at 4841.345 kb on + strand at 4841.345 kb on + strand at 4841.346 kb on - strand at 4841.346 kb on - strand at 4841.346 kb on - strand at 4841.347 kb on + strand at 4841.347 kb on + strand at 4841.347 kb on + strand at 4841.374 kb on + strand at 4841.374 kb on + strand at 4841.395 kb on + strand at 4841.395 kb on + strand at 4841.396 kb on - strand at 4842.063 kb on + strand at 4842.064 kb on - strand at 4842.188 kb on + strand at 4842.188 kb on + strand at 4842.189 kb on - strand at 4842.197 kb on + strand at 4842.197 kb on + strand at 4842.197 kb on + strand at 4842.197 kb on + strand at 4842.197 kb on + strand at 4842.198 kb on - strand at 4842.198 kb on - strand at 4842.214 kb on - strand at 4842.214 kb on - strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.243 kb on - strand at 4842.249 kb on + strand at 4842.249 kb on + strand at 4842.249 kb on + strand at 4842.249 kb on + strand at 4842.249 kb on + strand at 4842.249 kb on + strand at 4842.249 kb on + strand at 4842.250 kb on - strand at 4842.250 kb on - strand at 4842.250 kb on - strand at 4842.257 kb on + strand at 4842.258 kb on - strand at 4842.280 kb on + strand at 4842.280 kb on + strand at 4842.280 kb on + strand at 4842.281 kb on - strand at 4842.281 kb on - strand at 4842.408 kb on + strand at 4842.409 kb on - strand at 4842.427 kb on + strand at 4842.427 kb on + strand at 4842.427 kb on + strand at 4842.551 kb on + strand at 4842.552 kb on - strand at 4842.552 kb on - strand at 4842.630 kb on - strand, within Psyr_4060 at 4842.705 kb on + strand, within Psyr_4060 at 4842.705 kb on + strand, within Psyr_4060 at 4842.845 kb on + strand, within Psyr_4060 at 4842.849 kb on - strand, within Psyr_4060 at 4842.884 kb on + strand, within Psyr_4060 at 4842.965 kb on + strand, within Psyr_4060 at 4842.966 kb on - strand, within Psyr_4060 at 4842.966 kb on - strand, within Psyr_4060 at 4842.966 kb on - strand, within Psyr_4060 at 4842.966 kb on - strand, within Psyr_4060 at 4842.966 kb on - strand, within Psyr_4060 at 4842.974 kb on + strand, within Psyr_4060 at 4842.974 kb on + strand, within Psyr_4060 at 4842.975 kb on - strand, within Psyr_4060
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 4,840,555 + +0.4 4,840,605 + -0.3 4,840,656 + +2.5 4,840,656 + -0.5 4,840,656 + -0.3 4,840,656 + +1.5 4,840,656 + -0.3 4,840,656 + -2.0 4,840,656 + -0.4 4,840,656 + +0.5 4,840,656 + -0.4 4,840,656 + -0.0 4,840,656 + -0.2 4,840,656 + +0.4 4,840,656 + +1.8 4,840,657 - -1.0 4,840,657 - -0.4 4,840,657 - -0.7 4,840,657 - +0.2 4,840,657 - +0.3 4,840,657 - -2.0 4,840,657 - -0.7 4,840,657 - +0.8 4,840,657 - -0.6 4,840,657 - +0.2 4,840,657 - +0.4 4,840,657 - -0.6 4,840,657 - -0.2 4,840,660 + +1.4 4,840,660 + +0.8 4,840,660 + -0.5 4,840,660 + -0.3 4,840,660 + +0.8 4,840,660 + -0.5 4,840,660 + +0.7 4,840,660 + -1.2 4,840,660 + -1.2 4,840,660 + -0.7 4,840,660 + +0.4 4,840,660 + +0.2 4,840,660 + +0.3 4,840,661 - +0.6 4,840,661 - -0.2 4,840,661 - -0.3 4,840,661 - +0.8 4,840,661 - -0.3 4,840,661 - +0.4 4,840,661 - +0.8 4,840,661 - +1.7 4,840,661 - -0.2 4,840,661 - +0.3 4,840,674 - -0.5 4,840,674 - +1.8 4,840,674 - +0.3 4,840,674 - +0.7 4,840,792 + Psyr_4058 0.22 +0.1 4,840,793 - Psyr_4058 0.22 -0.9 4,840,893 + Psyr_4058 0.38 -1.6 4,840,894 - Psyr_4058 0.39 -2.0 4,840,894 - Psyr_4058 0.39 +0.6 4,840,894 - Psyr_4058 0.39 +1.2 4,840,907 + Psyr_4058 0.41 +0.4 4,841,036 + Psyr_4058 0.62 -1.2 4,841,036 + Psyr_4058 0.62 -0.3 4,841,036 + Psyr_4058 0.62 -0.7 4,841,037 - Psyr_4058 0.62 +1.2 4,841,037 - Psyr_4058 0.62 -0.1 4,841,037 - Psyr_4058 0.62 +0.4 4,841,037 - Psyr_4058 0.62 +1.0 4,841,037 - Psyr_4058 0.62 +1.0 4,841,037 - Psyr_4058 0.62 -0.2 4,841,037 - Psyr_4058 0.62 -0.7 4,841,037 - Psyr_4058 0.62 +1.8 4,841,049 + Psyr_4058 0.64 -0.7 4,841,049 + Psyr_4058 0.64 +0.6 4,841,049 + Psyr_4058 0.64 +0.2 4,841,052 + Psyr_4058 0.65 +0.4 4,841,052 + Psyr_4058 0.65 +0.2 4,841,053 - Psyr_4058 0.65 +0.3 4,841,053 - Psyr_4058 0.65 -0.6 4,841,053 - Psyr_4058 0.65 -1.5 4,841,096 + Psyr_4058 0.72 -0.7 4,841,097 - Psyr_4058 0.72 -0.2 4,841,097 - Psyr_4058 0.72 +0.7 4,841,100 + Psyr_4058 0.73 +0.3 4,841,100 + Psyr_4058 0.73 +0.6 4,841,100 + Psyr_4058 0.73 -1.2 4,841,100 + Psyr_4058 0.73 -0.6 4,841,100 + Psyr_4058 0.73 +0.8 4,841,101 - Psyr_4058 0.73 -1.7 4,841,101 - Psyr_4058 0.73 +0.8 4,841,101 - Psyr_4058 0.73 -0.2 4,841,101 - Psyr_4058 0.73 -0.2 4,841,101 - Psyr_4058 0.73 -0.6 4,841,101 - Psyr_4058 0.73 -0.2 4,841,101 - Psyr_4058 0.73 +1.0 4,841,345 + +0.7 4,841,345 + +0.1 4,841,345 + -0.4 4,841,345 + +0.4 4,841,345 + -0.3 4,841,345 + +2.4 4,841,346 - +1.1 4,841,346 - +0.1 4,841,346 - +0.7 4,841,347 + +0.1 4,841,347 + -0.5 4,841,347 + -1.2 4,841,374 + -1.7 4,841,374 + +0.9 4,841,395 + -0.3 4,841,395 + -1.5 4,841,396 - -0.5 4,842,063 + +0.4 4,842,064 - -0.7 4,842,188 + +1.7 4,842,188 + +1.2 4,842,189 - +0.3 4,842,197 + +0.1 4,842,197 + -0.9 4,842,197 + +0.4 4,842,197 + -0.9 4,842,197 + +0.3 4,842,198 - +0.6 4,842,198 - +1.3 4,842,214 - -0.5 4,842,214 - +0.7 4,842,234 + +2.3 4,842,234 + -0.2 4,842,234 + +0.8 4,842,234 + -0.4 4,842,234 + +1.5 4,842,234 + +1.2 4,842,234 + +0.4 4,842,234 + -0.6 4,842,235 - -0.5 4,842,235 - +0.3 4,842,235 - +0.3 4,842,235 - -0.9 4,842,235 - +0.2 4,842,235 - +0.0 4,842,235 - +0.8 4,842,235 - +0.8 4,842,243 - -0.0 4,842,249 + -0.1 4,842,249 + +1.8 4,842,249 + +0.8 4,842,249 + -0.2 4,842,249 + +0.7 4,842,249 + +0.1 4,842,249 + -0.2 4,842,250 - +0.5 4,842,250 - -1.2 4,842,250 - -2.5 4,842,257 + +1.8 4,842,258 - +0.3 4,842,280 + -1.0 4,842,280 + -0.4 4,842,280 + +0.4 4,842,281 - +0.3 4,842,281 - +0.2 4,842,408 + -1.2 4,842,409 - +0.0 4,842,427 + +1.3 4,842,427 + -0.5 4,842,427 + +0.5 4,842,551 + +0.1 4,842,552 - +1.0 4,842,552 - +0.6 4,842,630 - Psyr_4060 0.12 +1.0 4,842,705 + Psyr_4060 0.16 -0.2 4,842,705 + Psyr_4060 0.16 -0.1 4,842,845 + Psyr_4060 0.22 +0.4 4,842,849 - Psyr_4060 0.22 +0.5 4,842,884 + Psyr_4060 0.24 +2.4 4,842,965 + Psyr_4060 0.28 +0.8 4,842,966 - Psyr_4060 0.28 -0.3 4,842,966 - Psyr_4060 0.28 +0.4 4,842,966 - Psyr_4060 0.28 -2.1 4,842,966 - Psyr_4060 0.28 -0.5 4,842,966 - Psyr_4060 0.28 +2.4 4,842,974 + Psyr_4060 0.28 -1.2 4,842,974 + Psyr_4060 0.28 +0.3 4,842,975 - Psyr_4060 0.28 -1.0
Or see this region's nucleotide sequence