Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4027 and Psyr_4028 are separated by 203 nucleotides Psyr_4028 and Psyr_4029 are separated by 176 nucleotides Psyr_4029 and Psyr_4030 are separated by 113 nucleotides
Psyr_4027: Psyr_4027 - conserved hypothetical protein, at 4,795,656 to 4,796,015
_4027
Psyr_4028: Psyr_4028 - lipoprotein, putative, at 4,796,219 to 4,796,614
_4028
Psyr_4029: Psyr_4029 - pyruvate kinase, at 4,796,791 to 4,798,242
_4029
Psyr_4030: Psyr_4030 - Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein, at 4,798,356 to 4,799,294
_4030
Position (kb) 4796
4797
4798
4799 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4795.895 kb on + strand, within Psyr_4027 at 4795.949 kb on + strand, within Psyr_4027 at 4795.972 kb on + strand, within Psyr_4027 at 4795.972 kb on + strand, within Psyr_4027 at 4795.972 kb on + strand, within Psyr_4027 at 4796.009 kb on + strand at 4796.009 kb on + strand at 4796.009 kb on + strand at 4796.010 kb on - strand at 4796.010 kb on - strand at 4796.010 kb on - strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.011 kb on + strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.012 kb on - strand at 4796.160 kb on + strand at 4796.161 kb on - strand at 4796.161 kb on - strand at 4796.216 kb on + strand at 4796.217 kb on - strand at 4796.220 kb on + strand at 4796.220 kb on + strand at 4796.220 kb on + strand at 4796.221 kb on - strand at 4796.221 kb on - strand at 4796.221 kb on - strand at 4796.221 kb on - strand at 4796.221 kb on - strand at 4796.221 kb on - strand at 4796.249 kb on + strand at 4796.249 kb on + strand at 4796.249 kb on + strand at 4796.250 kb on - strand at 4796.255 kb on + strand at 4796.255 kb on + strand at 4796.255 kb on + strand at 4796.255 kb on + strand at 4796.334 kb on + strand, within Psyr_4028 at 4796.370 kb on + strand, within Psyr_4028 at 4796.370 kb on + strand, within Psyr_4028 at 4796.370 kb on + strand, within Psyr_4028 at 4796.370 kb on + strand, within Psyr_4028 at 4796.371 kb on - strand, within Psyr_4028 at 4796.371 kb on - strand, within Psyr_4028 at 4796.391 kb on + strand, within Psyr_4028 at 4796.391 kb on + strand, within Psyr_4028 at 4796.391 kb on + strand, within Psyr_4028 at 4796.391 kb on + strand, within Psyr_4028 at 4796.392 kb on - strand, within Psyr_4028 at 4796.448 kb on + strand, within Psyr_4028 at 4796.448 kb on + strand, within Psyr_4028 at 4796.448 kb on + strand, within Psyr_4028 at 4796.588 kb on + strand at 4796.591 kb on + strand at 4796.591 kb on + strand at 4796.591 kb on + strand at 4796.591 kb on + strand at 4796.591 kb on + strand at 4796.591 kb on + strand at 4796.591 kb on + strand at 4796.592 kb on - strand at 4796.592 kb on - strand at 4796.592 kb on - strand at 4796.592 kb on - strand at 4796.592 kb on - strand at 4796.592 kb on - strand at 4796.592 kb on - strand at 4796.592 kb on - strand at 4796.603 kb on + strand at 4796.608 kb on + strand at 4796.608 kb on + strand at 4796.672 kb on - strand at 4796.755 kb on + strand at 4796.755 kb on + strand at 4796.756 kb on - strand at 4796.777 kb on + strand at 4796.778 kb on - strand at 4797.015 kb on + strand, within Psyr_4029 at 4797.041 kb on + strand, within Psyr_4029 at 4797.041 kb on + strand, within Psyr_4029 at 4797.042 kb on - strand, within Psyr_4029 at 4797.042 kb on - strand, within Psyr_4029 at 4797.153 kb on - strand, within Psyr_4029 at 4797.358 kb on + strand, within Psyr_4029 at 4797.400 kb on + strand, within Psyr_4029 at 4797.715 kb on + strand, within Psyr_4029 at 4797.716 kb on - strand, within Psyr_4029 at 4797.793 kb on - strand, within Psyr_4029 at 4797.895 kb on + strand, within Psyr_4029 at 4797.895 kb on + strand, within Psyr_4029 at 4797.895 kb on + strand, within Psyr_4029 at 4797.895 kb on + strand, within Psyr_4029 at 4797.895 kb on + strand, within Psyr_4029 at 4797.895 kb on + strand, within Psyr_4029 at 4797.896 kb on - strand, within Psyr_4029 at 4797.896 kb on - strand, within Psyr_4029 at 4797.997 kb on + strand, within Psyr_4029 at 4797.997 kb on + strand, within Psyr_4029 at 4797.998 kb on - strand, within Psyr_4029 at 4798.020 kb on + strand, within Psyr_4029 at 4798.055 kb on - strand, within Psyr_4029 at 4798.055 kb on - strand, within Psyr_4029 at 4798.180 kb on + strand at 4798.180 kb on + strand at 4798.180 kb on + strand at 4798.181 kb on - strand at 4798.181 kb on - strand at 4798.318 kb on - strand at 4798.341 kb on + strand at 4798.341 kb on + strand at 4798.341 kb on + strand at 4798.342 kb on - strand at 4798.342 kb on - strand at 4798.342 kb on - strand at 4798.394 kb on + strand at 4798.414 kb on + strand at 4798.414 kb on + strand at 4798.414 kb on + strand at 4798.415 kb on - strand at 4798.415 kb on - strand at 4798.415 kb on - strand at 4798.588 kb on + strand, within Psyr_4030 at 4798.588 kb on + strand, within Psyr_4030 at 4798.589 kb on - strand, within Psyr_4030 at 4798.589 kb on - strand, within Psyr_4030 at 4798.940 kb on - strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.198 kb on + strand, within Psyr_4030 at 4799.199 kb on - strand, within Psyr_4030 at 4799.199 kb on - strand, within Psyr_4030 at 4799.199 kb on - strand, within Psyr_4030 at 4799.199 kb on - strand, within Psyr_4030 at 4799.199 kb on - strand, within Psyr_4030 at 4799.199 kb on - strand, within Psyr_4030 at 4799.199 kb on - strand, within Psyr_4030 at 4799.199 kb on - strand, within Psyr_4030 at 4799.199 kb on - strand, within Psyr_4030 at 4799.201 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 4,795,895 + Psyr_4027 0.66 -0.5 4,795,949 + Psyr_4027 0.81 -1.3 4,795,972 + Psyr_4027 0.88 +0.4 4,795,972 + Psyr_4027 0.88 -2.3 4,795,972 + Psyr_4027 0.88 +1.2 4,796,009 + +0.3 4,796,009 + +0.0 4,796,009 + -1.0 4,796,010 - -0.2 4,796,010 - +0.5 4,796,010 - +1.8 4,796,011 + -2.9 4,796,011 + -0.6 4,796,011 + +0.1 4,796,011 + +0.8 4,796,011 + +0.8 4,796,011 + +0.5 4,796,011 + +0.4 4,796,011 + +1.8 4,796,011 + +0.8 4,796,011 + +1.1 4,796,012 - -0.8 4,796,012 - +0.0 4,796,012 - -0.3 4,796,012 - +0.4 4,796,012 - +0.2 4,796,012 - -0.7 4,796,012 - -0.4 4,796,012 - +1.4 4,796,012 - -0.1 4,796,012 - +0.2 4,796,012 - +0.9 4,796,012 - +0.8 4,796,012 - +0.1 4,796,012 - +1.4 4,796,012 - -2.3 4,796,012 - +0.3 4,796,160 + -1.2 4,796,161 - -1.4 4,796,161 - +1.4 4,796,216 + -0.2 4,796,217 - +0.2 4,796,220 + +0.3 4,796,220 + -0.5 4,796,220 + -0.2 4,796,221 - +0.1 4,796,221 - +0.1 4,796,221 - +0.2 4,796,221 - -0.2 4,796,221 - -0.5 4,796,221 - -0.3 4,796,249 + +0.5 4,796,249 + +0.3 4,796,249 + -0.3 4,796,250 - -1.2 4,796,255 + +0.8 4,796,255 + +1.7 4,796,255 + +1.3 4,796,255 + -0.5 4,796,334 + Psyr_4028 0.29 -0.5 4,796,370 + Psyr_4028 0.38 +0.4 4,796,370 + Psyr_4028 0.38 -0.3 4,796,370 + Psyr_4028 0.38 -0.7 4,796,370 + Psyr_4028 0.38 -1.5 4,796,371 - Psyr_4028 0.38 -0.7 4,796,371 - Psyr_4028 0.38 +1.3 4,796,391 + Psyr_4028 0.43 +0.1 4,796,391 + Psyr_4028 0.43 -0.6 4,796,391 + Psyr_4028 0.43 +0.6 4,796,391 + Psyr_4028 0.43 -0.2 4,796,392 - Psyr_4028 0.44 +0.1 4,796,448 + Psyr_4028 0.58 +1.5 4,796,448 + Psyr_4028 0.58 +0.4 4,796,448 + Psyr_4028 0.58 +1.1 4,796,588 + -0.7 4,796,591 + +0.3 4,796,591 + -0.0 4,796,591 + +0.0 4,796,591 + -0.7 4,796,591 + -1.2 4,796,591 + -2.0 4,796,591 + -0.8 4,796,592 - -0.6 4,796,592 - +0.2 4,796,592 - -0.7 4,796,592 - +1.4 4,796,592 - -0.7 4,796,592 - -0.2 4,796,592 - -1.0 4,796,592 - -0.4 4,796,603 + -0.2 4,796,608 + -0.4 4,796,608 + +1.4 4,796,672 - -0.0 4,796,755 + -0.0 4,796,755 + +1.7 4,796,756 - -0.3 4,796,777 + -0.3 4,796,778 - -2.0 4,797,015 + Psyr_4029 0.15 -0.5 4,797,041 + Psyr_4029 0.17 -1.0 4,797,041 + Psyr_4029 0.17 -1.3 4,797,042 - Psyr_4029 0.17 -0.2 4,797,042 - Psyr_4029 0.17 -0.6 4,797,153 - Psyr_4029 0.25 -1.4 4,797,358 + Psyr_4029 0.39 +0.1 4,797,400 + Psyr_4029 0.42 -0.9 4,797,715 + Psyr_4029 0.64 -1.8 4,797,716 - Psyr_4029 0.64 +0.0 4,797,793 - Psyr_4029 0.69 -0.2 4,797,895 + Psyr_4029 0.76 -0.7 4,797,895 + Psyr_4029 0.76 -0.2 4,797,895 + Psyr_4029 0.76 -1.0 4,797,895 + Psyr_4029 0.76 -1.5 4,797,895 + Psyr_4029 0.76 -0.9 4,797,895 + Psyr_4029 0.76 +0.6 4,797,896 - Psyr_4029 0.76 +1.2 4,797,896 - Psyr_4029 0.76 -0.8 4,797,997 + Psyr_4029 0.83 -2.2 4,797,997 + Psyr_4029 0.83 +0.6 4,797,998 - Psyr_4029 0.83 -1.3 4,798,020 + Psyr_4029 0.85 +0.6 4,798,055 - Psyr_4029 0.87 -0.7 4,798,055 - Psyr_4029 0.87 -0.3 4,798,180 + +0.8 4,798,180 + +0.0 4,798,180 + +0.3 4,798,181 - -0.2 4,798,181 - -1.3 4,798,318 - +1.4 4,798,341 + +1.6 4,798,341 + -0.3 4,798,341 + +0.5 4,798,342 - +0.3 4,798,342 - +1.8 4,798,342 - -0.7 4,798,394 + +0.6 4,798,414 + +0.6 4,798,414 + +0.4 4,798,414 + +0.8 4,798,415 - -0.8 4,798,415 - +0.5 4,798,415 - -0.1 4,798,588 + Psyr_4030 0.25 -0.2 4,798,588 + Psyr_4030 0.25 +0.7 4,798,589 - Psyr_4030 0.25 -0.2 4,798,589 - Psyr_4030 0.25 -0.2 4,798,940 - Psyr_4030 0.62 +0.4 4,799,198 + Psyr_4030 0.90 +0.4 4,799,198 + Psyr_4030 0.90 +0.3 4,799,198 + Psyr_4030 0.90 +0.4 4,799,198 + Psyr_4030 0.90 +0.4 4,799,198 + Psyr_4030 0.90 +1.1 4,799,198 + Psyr_4030 0.90 +0.4 4,799,198 + Psyr_4030 0.90 -0.3 4,799,198 + Psyr_4030 0.90 -1.0 4,799,198 + Psyr_4030 0.90 -0.2 4,799,198 + Psyr_4030 0.90 +1.4 4,799,198 + Psyr_4030 0.90 +0.8 4,799,198 + Psyr_4030 0.90 -0.3 4,799,198 + Psyr_4030 0.90 -2.5 4,799,198 + Psyr_4030 0.90 -0.2 4,799,198 + Psyr_4030 0.90 +0.8 4,799,198 + Psyr_4030 0.90 +0.6 4,799,198 + Psyr_4030 0.90 +0.5 4,799,198 + Psyr_4030 0.90 +0.6 4,799,198 + Psyr_4030 0.90 -0.7 4,799,198 + Psyr_4030 0.90 -0.1 4,799,198 + Psyr_4030 0.90 +1.0 4,799,198 + Psyr_4030 0.90 +1.0 4,799,199 - Psyr_4030 0.90 -0.3 4,799,199 - Psyr_4030 0.90 -0.9 4,799,199 - Psyr_4030 0.90 -0.2 4,799,199 - Psyr_4030 0.90 -1.0 4,799,199 - Psyr_4030 0.90 -0.5 4,799,199 - Psyr_4030 0.90 +1.4 4,799,199 - Psyr_4030 0.90 -1.5 4,799,199 - Psyr_4030 0.90 +0.2 4,799,199 - Psyr_4030 0.90 +1.3 4,799,201 - +1.2
Or see this region's nucleotide sequence