Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4015

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
4,782,231	+				-0.7
4,782,260	+				+0.0
4,782,260	+				+0.2
4,782,260	+				-0.6
4,782,260	+				-0.4
4,782,260	+				+0.4
4,782,260	+				+0.0
4,782,260	-				+0.3
4,782,261	-				-0.7
4,782,261	-				+0.1
4,782,261	-				+0.7
4,782,261	-				+0.3
4,782,264	+				+2.2
4,782,264	+				-0.8
4,782,264	+				+0.5
4,782,264	+				-0.5
4,782,264	+				+0.1
4,782,264	+				-2.0
4,782,264	+				-0.2
4,782,264	+				-1.7
4,782,264	+				-0.2
4,782,265	-				-0.2
4,782,265	-				+0.5
4,782,265	-				-0.2
4,782,265	-				-0.6
4,782,265	-				-0.6
4,782,265	-				+0.4
4,782,379	+				+0.1
4,782,379	+				+0.8
4,782,379	+				+0.3
4,782,379	+				+1.0
4,782,379	+				-0.6
4,782,379	+				+0.5
4,782,379	+				+0.1
4,782,380	-				+0.7
4,782,380	-				-0.7
4,782,380	-				+0.8
4,782,380	-				+0.2
4,782,380	-				+0.7
4,782,380	-				+0.7
4,782,383	+				+1.8
4,782,383	+				+0.1
4,782,383	+				-0.1
4,782,384	-				-0.7
4,782,384	-				-0.5
4,782,384	-				+0.0
4,782,384	-				+0.4
4,782,384	-				-0.3
4,782,385	+				-0.5
4,782,385	+				-0.5
4,782,385	+				+0.3
4,782,385	+				-0.5
4,782,385	+				+1.0
4,782,385	+				-0.7
4,782,385	+				+0.1
4,782,385	+				-0.2
4,782,385	+				-0.6
4,782,385	+				+0.0
4,782,386	-				+0.3
4,782,386	-				+0.7
4,782,386	-				-0.6
4,782,386	-				-0.2
4,782,386	-				+0.4
4,782,386	-				+0.8
4,782,386	-				+0.1
4,782,386	-				-0.5
4,782,386	-				-2.3
4,782,389	+				+0.4
4,782,389	+				+0.4
4,782,389	+				+0.8
4,782,389	+				-1.1
4,782,389	+				-0.2
4,782,389	+				+0.3
4,782,389	+				+0.1
4,782,389	+				+2.0
4,782,389	+				+1.0
4,782,389	+				+0.8
4,782,389	+				-0.1
4,782,390	-				+0.5
4,782,390	-				+0.5
4,782,390	-				-1.1
4,782,390	-				-0.5
4,782,390	-				-1.2
4,782,390	-				-0.8
4,782,390	-				+0.4
4,782,390	-				+0.8
4,782,390	-				-0.9
4,782,390	-				-1.1
4,782,390	-				-0.0
4,782,390	-				+1.5
4,782,391	+				+1.1
4,782,391	+				+0.5
4,782,391	+				-0.7
4,782,391	+				-0.9
4,782,391	+				-0.4
4,782,391	+				+1.0
4,782,391	+				-1.6
4,782,391	+				+0.2
4,782,391	+				+0.7
4,782,392	-				+1.1
4,782,392	-				-0.7
4,782,392	-				-0.6
4,782,392	-				-0.0
4,782,392	-				+0.3
4,782,392	-				+0.8
4,782,392	-				+1.7
4,782,398	-				-0.8
4,782,494	+				-0.2
4,782,494	+				-0.7
4,782,586	+				-1.2
4,782,588	+				-0.4
4,782,652	+				+1.4
4,782,653	-				-0.0
4,782,653	-				+0.2
4,782,659	+				-1.0
4,782,660	-				-1.7
4,782,660	-				-0.8
4,782,660	-				+1.0
4,782,661	+				+0.0
4,782,693	-				+0.4
4,782,693	-				-0.2
4,782,739	+				+0.7
4,782,740	-				-1.5
4,782,758	+				-1.2
4,782,759	-				-2.2
4,782,759	-				-0.8
4,782,762	-				-0.7
4,782,931	+				-0.3
4,782,931	+				+0.5
4,782,931	+				+0.0
4,782,932	-				-1.5
4,782,932	-				+0.3
4,782,932	-				-2.9
4,782,932	-				-1.8
4,782,932	-				+0.5
4,783,019	-				-0.2
4,783,019	-				-1.2
4,783,027	+				+0.4
4,783,027	+				+0.8
4,783,027	+				+0.8
4,783,028	-				-0.4
4,783,049	+				+0.8
4,783,049	+				-1.6
4,783,049	+				-0.2
4,783,049	+				+0.0
4,783,049	+				+0.5
4,783,050	-				-0.3
4,783,050	-				+2.4
4,783,050	-				-0.5
4,783,098	+				+1.3
4,783,098	+				-2.0
4,783,102	-				-0.2
4,783,153	+		Psyr_4015	0.24	-1.0
4,783,154	-		Psyr_4015	0.25	-0.5
4,783,166	-		Psyr_4015	0.31	-0.2
4,783,186	+		Psyr_4015	0.41	-0.7
4,783,332	+				+0.8
4,783,333	-				+1.0
4,783,360	+				+0.2
4,783,360	+				-0.0
4,783,507	+				+0.0
4,783,685	+		Psyr_4016	0.12	-0.2