Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3965

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3964 and Psyr_3965 overlap by 8 nucleotidesPsyr_3965 and Psyr_3966 are separated by 469 nucleotides Psyr_3964: Psyr_3964 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,711,422 to 4,712,804 _3964 Psyr_3965: Psyr_3965 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,712,797 to 4,713,468 _3965 Psyr_3966: Psyr_3966 - Uncharacterized protein UPF0065, at 4,713,938 to 4,714,915 _3966 Position (kb) 4712 4713 4714Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4712.431 kb on + strand, within Psyr_3964at 4712.432 kb on - strand, within Psyr_3964at 4712.432 kb on - strand, within Psyr_3964at 4712.551 kb on + strand, within Psyr_3964at 4712.552 kb on - strand, within Psyr_3964at 4712.552 kb on - strand, within Psyr_3964at 4712.554 kb on + strand, within Psyr_3964at 4712.554 kb on + strand, within Psyr_3964at 4712.554 kb on + strand, within Psyr_3964at 4712.554 kb on + strand, within Psyr_3964at 4712.554 kb on + strand, within Psyr_3964at 4712.554 kb on + strand, within Psyr_3964at 4712.554 kb on + strand, within Psyr_3964at 4712.554 kb on + strand, within Psyr_3964at 4712.555 kb on - strand, within Psyr_3964at 4712.555 kb on - strand, within Psyr_3964at 4712.555 kb on - strand, within Psyr_3964at 4712.555 kb on - strand, within Psyr_3964at 4712.555 kb on - strand, within Psyr_3964at 4712.555 kb on - strand, within Psyr_3964at 4712.555 kb on - strand, within Psyr_3964at 4712.575 kb on + strand, within Psyr_3964at 4712.586 kb on - strand, within Psyr_3964at 4712.599 kb on + strand, within Psyr_3964at 4712.599 kb on + strand, within Psyr_3964at 4712.683 kb on + strandat 4712.716 kb on + strandat 4712.717 kb on - strandat 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strandat 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4713.068 kb on + strand, within Psyr_3965at 4713.176 kb on + strand, within Psyr_3965at 4713.177 kb on - strand, within Psyr_3965at 4713.335 kb on + strand, within Psyr_3965at 4713.659 kb on - strandat 4713.659 kb on - strandat 4713.663 kb on - strandat 4713.663 kb on - strandat 4713.694 kb on + strandat 4713.694 kb on + strandat 4713.694 kb on + strandat 4713.695 kb on - strandat 4713.703 kb on + strandat 4713.732 kb on + strandat 4713.733 kb on - strandat 4713.733 kb on - strandat 4713.920 kb on + strandat 4713.921 kb on - strandat 4713.921 kb on - strandat 4713.921 kb on - strandat 4713.921 kb on - strandat 4713.921 kb on - strandat 4713.921 kb on - strandat 4713.921 kb on - strandat 4713.921 kb on - strandat 4713.921 kb on - strandat 4713.958 kb on + strandat 4713.959 kb on - strandat 4713.961 kb on - strandat 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.130 kb on + strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.131 kb on - strand, within Psyr_3966at 4714.160 kb on + strand, within Psyr_3966at 4714.160 kb on + strand, within Psyr_3966at 4714.304 kb on + strand, within Psyr_3966at 4714.304 kb on + strand, within Psyr_3966at 4714.337 kb on + strand, within Psyr_3966at 4714.337 kb on + strand, within Psyr_3966at 4714.338 kb on - strand, within Psyr_3966at 4714.338 kb on - strand, within Psyr_3966

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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4,712,431 + Psyr_3964 0.73 -1.2
4,712,432 - Psyr_3964 0.73 -0.3
4,712,432 - Psyr_3964 0.73 +0.8
4,712,551 + Psyr_3964 0.82 +1.6
4,712,552 - Psyr_3964 0.82 -0.0
4,712,552 - Psyr_3964 0.82 +0.4
4,712,554 + Psyr_3964 0.82 +0.6
4,712,554 + Psyr_3964 0.82 +0.4
4,712,554 + Psyr_3964 0.82 -1.0
4,712,554 + Psyr_3964 0.82 +0.7
4,712,554 + Psyr_3964 0.82 +0.0
4,712,554 + Psyr_3964 0.82 +1.0
4,712,554 + Psyr_3964 0.82 +2.0
4,712,554 + Psyr_3964 0.82 -0.5
4,712,555 - Psyr_3964 0.82 +0.6
4,712,555 - Psyr_3964 0.82 +0.8
4,712,555 - Psyr_3964 0.82 +2.0
4,712,555 - Psyr_3964 0.82 +0.5
4,712,555 - Psyr_3964 0.82 +0.1
4,712,555 - Psyr_3964 0.82 -0.3
4,712,555 - Psyr_3964 0.82 +0.7
4,712,575 + Psyr_3964 0.83 +0.2
4,712,586 - Psyr_3964 0.84 +0.9
4,712,599 + Psyr_3964 0.85 -0.4
4,712,599 + Psyr_3964 0.85 -1.2
4,712,683 + -0.2
4,712,716 + -0.1
4,712,717 - -1.2
4,712,891 + Psyr_3965 0.14 +0.0
4,712,891 + Psyr_3965 0.14 -0.0
4,712,891 + Psyr_3965 0.14 -0.6
4,712,891 + Psyr_3965 0.14 -0.4
4,712,891 + Psyr_3965 0.14 +0.0
4,712,891 + Psyr_3965 0.14 -1.8
4,712,891 + Psyr_3965 0.14 -0.1
4,712,891 + Psyr_3965 0.14 +0.2
4,712,891 + +0.8
4,712,891 + Psyr_3965 0.14 +1.3
4,712,891 + Psyr_3965 0.14 -0.2
4,712,891 + Psyr_3965 0.14 +2.0
4,712,891 + Psyr_3965 0.14 -1.0
4,712,891 + Psyr_3965 0.14 -0.2
4,712,891 + Psyr_3965 0.14 +0.8
4,712,891 + Psyr_3965 0.14 -0.2
4,712,891 + Psyr_3965 0.14 +0.2
4,712,891 + Psyr_3965 0.14 -1.0
4,712,892 - Psyr_3965 0.14 +0.9
4,712,892 - Psyr_3965 0.14 +0.1
4,712,892 - Psyr_3965 0.14 +0.3
4,712,892 - Psyr_3965 0.14 +2.1
4,712,892 - Psyr_3965 0.14 -0.8
4,712,892 - Psyr_3965 0.14 +0.0
4,712,892 - Psyr_3965 0.14 -2.9
4,712,892 - Psyr_3965 0.14 +0.6
4,712,892 - Psyr_3965 0.14 -1.2
4,712,892 - Psyr_3965 0.14 -0.6
4,712,892 - Psyr_3965 0.14 +0.4
4,712,892 - Psyr_3965 0.14 +0.1
4,712,892 - Psyr_3965 0.14 +0.0
4,712,892 - Psyr_3965 0.14 +1.8
4,712,892 - Psyr_3965 0.14 +1.0
4,712,892 - Psyr_3965 0.14 -0.5
4,712,892 - Psyr_3965 0.14 +0.4
4,712,892 - Psyr_3965 0.14 -0.2
4,713,068 + Psyr_3965 0.40 -0.7
4,713,176 + Psyr_3965 0.56 -0.1
4,713,177 - Psyr_3965 0.57 +0.2
4,713,335 + Psyr_3965 0.80 -0.2
4,713,659 - +0.6
4,713,659 - -0.8
4,713,663 - -1.6
4,713,663 - -0.1
4,713,694 + +0.8
4,713,694 + -0.3
4,713,694 + +1.4
4,713,695 - -0.0
4,713,703 + +0.5
4,713,732 + +0.7
4,713,733 - -1.5
4,713,733 - +1.1
4,713,920 + +0.4
4,713,921 - +0.8
4,713,921 - -0.3
4,713,921 - -0.5
4,713,921 - -0.2
4,713,921 - -1.5
4,713,921 - -2.2
4,713,921 - -0.1
4,713,921 - +1.8
4,713,921 - +2.4
4,713,958 + -0.8
4,713,959 - -0.4
4,713,961 - -0.4
4,714,130 + Psyr_3966 0.20 +1.6
4,714,130 + Psyr_3966 0.20 -0.6
4,714,130 + Psyr_3966 0.20 +2.1
4,714,130 + Psyr_3966 0.20 -0.2
4,714,130 + Psyr_3966 0.20 -0.5
4,714,130 + Psyr_3966 0.20 +1.1
4,714,130 + Psyr_3966 0.20 +1.8
4,714,130 + Psyr_3966 0.20 +0.2
4,714,130 + Psyr_3966 0.20 +0.2
4,714,130 + Psyr_3966 0.20 -1.2
4,714,130 + Psyr_3966 0.20 +1.0
4,714,130 + Psyr_3966 0.20 -0.5
4,714,130 + Psyr_3966 0.20 +0.1
4,714,130 + Psyr_3966 0.20 +0.1
4,714,130 + Psyr_3966 0.20 +1.3
4,714,131 - Psyr_3966 0.20 +0.3
4,714,131 - Psyr_3966 0.20 +0.9
4,714,131 - Psyr_3966 0.20 +0.6
4,714,131 - Psyr_3966 0.20 -0.3
4,714,131 - Psyr_3966 0.20 +0.3
4,714,131 - Psyr_3966 0.20 -0.8
4,714,131 - Psyr_3966 0.20 -0.1
4,714,131 - Psyr_3966 0.20 +1.5
4,714,131 - Psyr_3966 0.20 -1.2
4,714,131 - Psyr_3966 0.20 +0.4
4,714,131 - Psyr_3966 0.20 -1.3
4,714,131 - Psyr_3966 0.20 +2.6
4,714,131 - Psyr_3966 0.20 +0.7
4,714,131 - Psyr_3966 0.20 -1.0
4,714,131 - Psyr_3966 0.20 +0.5
4,714,131 - Psyr_3966 0.20 -1.5
4,714,131 - Psyr_3966 0.20 -0.4
4,714,131 - Psyr_3966 0.20 +1.8
4,714,131 - Psyr_3966 0.20 -0.1
4,714,160 + Psyr_3966 0.23 -0.8
4,714,160 + Psyr_3966 0.23 -0.5
4,714,304 + Psyr_3966 0.37 -1.4
4,714,304 + Psyr_3966 0.37 +0.8
4,714,337 + Psyr_3966 0.41 +0.4
4,714,337 + Psyr_3966 0.41 -0.5
4,714,338 - Psyr_3966 0.41 +0.6
4,714,338 - Psyr_3966 0.41 +0.1

Or see this region's nucleotide sequence