Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3964

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3962 and Psyr_3963 are separated by 111 nucleotidesPsyr_3963 and Psyr_3964 are separated by 10 nucleotidesPsyr_3964 and Psyr_3965 overlap by 8 nucleotides Psyr_3962: Psyr_3962 - Glycine cleavage T protein (aminomethyl transferase), at 4,709,531 to 4,710,478 _3962 Psyr_3963: Psyr_3963 - conserved hypothetical protein, at 4,710,590 to 4,711,411 _3963 Psyr_3964: Psyr_3964 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,711,422 to 4,712,804 _3964 Psyr_3965: Psyr_3965 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,712,797 to 4,713,468 _3965 Position (kb) 4711 4712 4713Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4710.443 kb on + strandat 4710.502 kb on + strandat 4710.503 kb on - strandat 4710.511 kb on + strandat 4710.718 kb on + strand, within Psyr_3963at 4710.718 kb on + strand, within Psyr_3963at 4710.718 kb on + strand, within Psyr_3963at 4710.857 kb on + strand, within Psyr_3963at 4710.857 kb on + strand, within Psyr_3963at 4710.857 kb on + strand, within Psyr_3963at 4710.857 kb on + strand, within Psyr_3963at 4710.858 kb on - strand, within Psyr_3963at 4710.858 kb on - strand, within Psyr_3963at 4710.858 kb on - strand, within Psyr_3963at 4710.858 kb on - strand, within Psyr_3963at 4710.858 kb on - strand, within Psyr_3963at 4710.858 kb on - strand, within Psyr_3963at 4710.858 kb on - strand, within Psyr_3963at 4710.858 kb on - strand, within Psyr_3963at 4710.858 kb on - strand, within Psyr_3963at 4710.977 kb on + strand, within Psyr_3963at 4710.977 kb on + strand, within Psyr_3963at 4710.978 kb on - strand, within Psyr_3963at 4711.070 kb on + strand, within Psyr_3963at 4711.071 kb on - strand, within Psyr_3963at 4711.071 kb on - strand, within Psyr_3963at 4711.245 kb on - strand, within Psyr_3963at 4711.258 kb on - strand, within Psyr_3963at 4711.258 kb on - strand, within Psyr_3963at 4711.334 kb on + strandat 4711.334 kb on + strandat 4711.335 kb on - strandat 4711.406 kb on + strandat 4711.406 kb on + strandat 4711.406 kb on + strandat 4711.407 kb on - strandat 4711.409 kb on + strandat 4711.409 kb on + strandat 4711.446 kb on + strandat 4711.447 kb on - strandat 4711.447 kb on - strandat 4711.629 kb on + strand, within Psyr_3964at 4711.629 kb on + strand, within Psyr_3964at 4711.630 kb on - strand, within Psyr_3964at 4711.713 kb on + strand, within Psyr_3964at 4712.431 kb on + strand, within Psyr_3964at 4712.432 kb on - strand, within Psyr_3964at 4712.432 kb on - strand, within Psyr_3964at 4712.551 kb on + strand, within Psyr_3964at 4712.552 kb on - strand, within Psyr_3964at 4712.552 kb on - strand, within Psyr_3964at 4712.554 kb on + strand, within Psyr_3964at 4712.554 kb on + strand, within Psyr_3964at 4712.554 kb on + strand, within Psyr_3964at 4712.554 kb on + strand, within Psyr_3964at 4712.554 kb on + strand, within Psyr_3964at 4712.554 kb on + strand, within Psyr_3964at 4712.554 kb on + strand, within Psyr_3964at 4712.554 kb on + strand, within Psyr_3964at 4712.555 kb on - strand, within Psyr_3964at 4712.555 kb on - strand, within Psyr_3964at 4712.555 kb on - strand, within Psyr_3964at 4712.555 kb on - strand, within Psyr_3964at 4712.555 kb on - strand, within Psyr_3964at 4712.555 kb on - strand, within Psyr_3964at 4712.555 kb on - strand, within Psyr_3964at 4712.575 kb on + strand, within Psyr_3964at 4712.586 kb on - strand, within Psyr_3964at 4712.599 kb on + strand, within Psyr_3964at 4712.599 kb on + strand, within Psyr_3964at 4712.683 kb on + strandat 4712.716 kb on + strandat 4712.717 kb on - strandat 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strandat 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.891 kb on + strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4712.892 kb on - strand, within Psyr_3965at 4713.068 kb on + strand, within Psyr_3965at 4713.176 kb on + strand, within Psyr_3965at 4713.177 kb on - strand, within Psyr_3965at 4713.335 kb on + strand, within Psyr_3965at 4713.659 kb on - strandat 4713.659 kb on - strandat 4713.663 kb on - strandat 4713.663 kb on - strandat 4713.694 kb on + strandat 4713.694 kb on + strandat 4713.694 kb on + strandat 4713.695 kb on - strandat 4713.703 kb on + strandat 4713.732 kb on + strandat 4713.733 kb on - strandat 4713.733 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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4,710,443 + +0.7
4,710,502 + -0.0
4,710,503 - +0.6
4,710,511 + +1.0
4,710,718 + Psyr_3963 0.16 +0.5
4,710,718 + Psyr_3963 0.16 +1.1
4,710,718 + Psyr_3963 0.16 -1.0
4,710,857 + Psyr_3963 0.32 -0.5
4,710,857 + Psyr_3963 0.32 +1.0
4,710,857 + Psyr_3963 0.32 +0.2
4,710,857 + Psyr_3963 0.32 -0.4
4,710,858 - Psyr_3963 0.33 -0.3
4,710,858 - Psyr_3963 0.33 +0.0
4,710,858 - Psyr_3963 0.33 +0.8
4,710,858 - Psyr_3963 0.33 -2.6
4,710,858 - Psyr_3963 0.33 +0.4
4,710,858 - Psyr_3963 0.33 -0.8
4,710,858 - Psyr_3963 0.33 -0.3
4,710,858 - Psyr_3963 0.33 +1.8
4,710,858 - Psyr_3963 0.33 +0.0
4,710,977 + Psyr_3963 0.47 +0.6
4,710,977 + Psyr_3963 0.47 -2.0
4,710,978 - Psyr_3963 0.47 -1.6
4,711,070 + Psyr_3963 0.58 -0.8
4,711,071 - Psyr_3963 0.59 -0.8
4,711,071 - Psyr_3963 0.59 +0.5
4,711,245 - Psyr_3963 0.80 -0.6
4,711,258 - Psyr_3963 0.81 -0.4
4,711,258 - Psyr_3963 0.81 -0.2
4,711,334 + -0.2
4,711,334 + +1.1
4,711,335 - -0.4
4,711,406 + +0.2
4,711,406 + +0.2
4,711,406 + +0.3
4,711,407 - -0.2
4,711,409 + -1.5
4,711,409 + +0.9
4,711,446 + -2.3
4,711,447 - +0.3
4,711,447 - +0.2
4,711,629 + Psyr_3964 0.15 -0.8
4,711,629 + Psyr_3964 0.15 -0.3
4,711,630 - Psyr_3964 0.15 +0.6
4,711,713 + Psyr_3964 0.21 +1.6
4,712,431 + Psyr_3964 0.73 -1.2
4,712,432 - Psyr_3964 0.73 -0.3
4,712,432 - Psyr_3964 0.73 +0.8
4,712,551 + Psyr_3964 0.82 +1.6
4,712,552 - Psyr_3964 0.82 -0.0
4,712,552 - Psyr_3964 0.82 +0.4
4,712,554 + Psyr_3964 0.82 +0.6
4,712,554 + Psyr_3964 0.82 +0.4
4,712,554 + Psyr_3964 0.82 -1.0
4,712,554 + Psyr_3964 0.82 +0.7
4,712,554 + Psyr_3964 0.82 +0.0
4,712,554 + Psyr_3964 0.82 +1.0
4,712,554 + Psyr_3964 0.82 +2.0
4,712,554 + Psyr_3964 0.82 -0.5
4,712,555 - Psyr_3964 0.82 +0.6
4,712,555 - Psyr_3964 0.82 +0.8
4,712,555 - Psyr_3964 0.82 +2.0
4,712,555 - Psyr_3964 0.82 +0.5
4,712,555 - Psyr_3964 0.82 +0.1
4,712,555 - Psyr_3964 0.82 -0.3
4,712,555 - Psyr_3964 0.82 +0.7
4,712,575 + Psyr_3964 0.83 +0.2
4,712,586 - Psyr_3964 0.84 +0.9
4,712,599 + Psyr_3964 0.85 -0.4
4,712,599 + Psyr_3964 0.85 -1.2
4,712,683 + -0.2
4,712,716 + -0.1
4,712,717 - -1.2
4,712,891 + Psyr_3965 0.14 +0.0
4,712,891 + Psyr_3965 0.14 -0.0
4,712,891 + Psyr_3965 0.14 -0.6
4,712,891 + Psyr_3965 0.14 -0.4
4,712,891 + Psyr_3965 0.14 +0.0
4,712,891 + Psyr_3965 0.14 -1.8
4,712,891 + Psyr_3965 0.14 -0.1
4,712,891 + Psyr_3965 0.14 +0.2
4,712,891 + +0.8
4,712,891 + Psyr_3965 0.14 +1.3
4,712,891 + Psyr_3965 0.14 -0.2
4,712,891 + Psyr_3965 0.14 +2.0
4,712,891 + Psyr_3965 0.14 -1.0
4,712,891 + Psyr_3965 0.14 -0.2
4,712,891 + Psyr_3965 0.14 +0.8
4,712,891 + Psyr_3965 0.14 -0.2
4,712,891 + Psyr_3965 0.14 +0.2
4,712,891 + Psyr_3965 0.14 -1.0
4,712,892 - Psyr_3965 0.14 +0.9
4,712,892 - Psyr_3965 0.14 +0.1
4,712,892 - Psyr_3965 0.14 +0.3
4,712,892 - Psyr_3965 0.14 +2.1
4,712,892 - Psyr_3965 0.14 -0.8
4,712,892 - Psyr_3965 0.14 +0.0
4,712,892 - Psyr_3965 0.14 -2.9
4,712,892 - Psyr_3965 0.14 +0.6
4,712,892 - Psyr_3965 0.14 -1.2
4,712,892 - Psyr_3965 0.14 -0.6
4,712,892 - Psyr_3965 0.14 +0.4
4,712,892 - Psyr_3965 0.14 +0.1
4,712,892 - Psyr_3965 0.14 +0.0
4,712,892 - Psyr_3965 0.14 +1.8
4,712,892 - Psyr_3965 0.14 +1.0
4,712,892 - Psyr_3965 0.14 -0.5
4,712,892 - Psyr_3965 0.14 +0.4
4,712,892 - Psyr_3965 0.14 -0.2
4,713,068 + Psyr_3965 0.40 -0.7
4,713,176 + Psyr_3965 0.56 -0.1
4,713,177 - Psyr_3965 0.57 +0.2
4,713,335 + Psyr_3965 0.80 -0.2
4,713,659 - +0.6
4,713,659 - -0.8
4,713,663 - -1.6
4,713,663 - -0.1
4,713,694 + +0.8
4,713,694 + -0.3
4,713,694 + +1.4
4,713,695 - -0.0
4,713,703 + +0.5
4,713,732 + +0.7
4,713,733 - -1.5
4,713,733 - +1.1

Or see this region's nucleotide sequence