Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3952 and Psyr_3953 are separated by 114 nucleotides Psyr_3953 and Psyr_3954 are separated by 9 nucleotides Psyr_3954 and Psyr_3955 are separated by 171 nucleotides
Psyr_3952: Psyr_3952 - conserved hypothetical protein, at 4,699,372 to 4,699,749
_3952
Psyr_3953: Psyr_3953 - signal peptidase I, Serine peptidase, MEROPS family S26A, at 4,699,864 to 4,700,718
_3953
Psyr_3954: Psyr_3954 - GTP-binding protein LepA, at 4,700,728 to 4,702,524
_3954
Psyr_3955: Psyr_3955 - Peptidase S1, chymotrypsin:PDZ/DHR/GLGF, at 4,702,696 to 4,704,141
_3955
Position (kb) 4700
4701
4702
4703 Strain fitness (log2 ratio) -2
-1
0
1 at 4699.738 kb on - strand at 4699.738 kb on - strand at 4699.738 kb on - strand at 4699.738 kb on - strand at 4699.738 kb on - strand at 4700.719 kb on - strand at 4700.830 kb on - strand at 4700.830 kb on - strand at 4700.870 kb on - strand at 4701.000 kb on - strand, within Psyr_3954 at 4701.000 kb on - strand, within Psyr_3954 at 4701.000 kb on - strand, within Psyr_3954 at 4701.000 kb on - strand, within Psyr_3954 at 4701.000 kb on - strand, within Psyr_3954 at 4701.123 kb on - strand, within Psyr_3954 at 4701.259 kb on - strand, within Psyr_3954 at 4701.259 kb on - strand, within Psyr_3954 at 4701.259 kb on - strand, within Psyr_3954 at 4701.259 kb on - strand, within Psyr_3954 at 4701.259 kb on - strand, within Psyr_3954 at 4701.369 kb on - strand, within Psyr_3954 at 4701.441 kb on - strand, within Psyr_3954 at 4701.441 kb on - strand, within Psyr_3954 at 4701.441 kb on - strand, within Psyr_3954 at 4701.441 kb on - strand, within Psyr_3954 at 4701.909 kb on - strand, within Psyr_3954 at 4702.167 kb on - strand, within Psyr_3954 at 4702.260 kb on - strand, within Psyr_3954 at 4702.329 kb on - strand, within Psyr_3954 at 4702.332 kb on - strand, within Psyr_3954 at 4702.584 kb on - strand at 4702.593 kb on - strand at 4702.593 kb on - strand at 4702.612 kb on + strand at 4702.613 kb on - strand at 4702.710 kb on + strand at 4702.710 kb on + strand at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.516 kb on + strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955 at 4703.517 kb on - strand, within Psyr_3955
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 4,699,738 - -0.2 4,699,738 - +0.3 4,699,738 - +0.1 4,699,738 - +1.6 4,699,738 - -0.1 4,700,719 - +0.2 4,700,830 - +0.8 4,700,830 - -0.9 4,700,870 - +0.8 4,701,000 - Psyr_3954 0.15 -1.4 4,701,000 - Psyr_3954 0.15 -1.2 4,701,000 - Psyr_3954 0.15 -0.2 4,701,000 - Psyr_3954 0.15 -1.0 4,701,000 - Psyr_3954 0.15 +0.8 4,701,123 - Psyr_3954 0.22 -0.0 4,701,259 - Psyr_3954 0.30 -0.8 4,701,259 - Psyr_3954 0.30 +0.4 4,701,259 - Psyr_3954 0.30 +1.4 4,701,259 - Psyr_3954 0.30 -0.9 4,701,259 - Psyr_3954 0.30 -0.8 4,701,369 - Psyr_3954 0.36 +0.1 4,701,441 - Psyr_3954 0.40 -1.5 4,701,441 - Psyr_3954 0.40 -1.8 4,701,441 - Psyr_3954 0.40 -1.5 4,701,441 - Psyr_3954 0.40 -1.2 4,701,909 - Psyr_3954 0.66 -1.8 4,702,167 - Psyr_3954 0.80 -1.4 4,702,260 - Psyr_3954 0.85 +0.3 4,702,329 - Psyr_3954 0.89 -0.5 4,702,332 - Psyr_3954 0.89 -2.2 4,702,584 - +0.7 4,702,593 - -2.3 4,702,593 - -0.4 4,702,612 + -1.1 4,702,613 - -0.4 4,702,710 + +0.4 4,702,710 + -0.3 4,703,516 + Psyr_3955 0.57 +0.1 4,703,516 + Psyr_3955 0.57 +1.3 4,703,516 + Psyr_3955 0.57 +0.1 4,703,516 + Psyr_3955 0.57 -1.3 4,703,516 + Psyr_3955 0.57 +1.1 4,703,516 + Psyr_3955 0.57 -0.7 4,703,516 + Psyr_3955 0.57 -0.2 4,703,517 - Psyr_3955 0.57 +1.4 4,703,517 - Psyr_3955 0.57 -1.4 4,703,517 - Psyr_3955 0.57 -0.9 4,703,517 - Psyr_3955 0.57 -0.6 4,703,517 - Psyr_3955 0.57 -1.8 4,703,517 - Psyr_3955 0.57 -0.2 4,703,517 - Psyr_3955 0.57 +1.0 4,703,517 - Psyr_3955 0.57 +0.5
Or see this region's nucleotide sequence