Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3923

Experiment: KB with Trimethoprim 125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Trimethoprim 125 ug/ml
4,664,736	+		Psyr_3921	0.90	-0.5
4,664,736	+		Psyr_3921	0.90	-0.4
4,664,736	+		Psyr_3921	0.90	+1.5
4,664,938	+				-0.3
4,664,971	+				-1.3
4,664,972	-				+0.5
4,664,972	-				+1.5
4,664,972	-				+0.4
4,664,972	-				-0.6
4,664,972	-				-0.9
4,665,020	-				+0.6
4,665,030	-				+0.5
4,665,112	-		Psyr_3922	0.22	-0.1
4,665,112	-		Psyr_3922	0.22	+0.8
4,665,181	+		Psyr_3922	0.33	-0.8
4,665,181	+		Psyr_3922	0.33	+0.1
4,665,181	+		Psyr_3922	0.33	-0.0
4,665,182	-		Psyr_3922	0.33	-1.1
4,665,234	+		Psyr_3922	0.41	+0.4
4,665,235	-		Psyr_3922	0.41	-0.6
4,665,235	-		Psyr_3922	0.41	+0.8
4,665,235	-		Psyr_3922	0.41	-0.8
4,665,235	-		Psyr_3922	0.41	+0.1
4,665,240	-		Psyr_3922	0.41	-0.9
4,665,284	+		Psyr_3922	0.48	+0.4
4,665,415	+		Psyr_3922	0.68	-0.5
4,665,497	+		Psyr_3922	0.80	+1.9
4,665,584	+				-1.0
4,665,584	+				+0.5
4,665,585	-				+1.1
4,665,612	-				+0.5
4,665,732	-				+0.4
4,665,798	+		Psyr_3923	0.13	-1.5
4,665,798	+		Psyr_3923	0.13	-0.7
4,665,798	+		Psyr_3923	0.13	-1.2
4,665,799	-		Psyr_3923	0.13	-0.8
4,665,799	-		Psyr_3923	0.13	+0.1
4,665,799	-		Psyr_3923	0.13	-0.8
4,665,799	-		Psyr_3923	0.13	-0.8
4,665,799	-		Psyr_3923	0.13	-1.6
4,665,800	+		Psyr_3923	0.13	-2.0
4,665,801	-		Psyr_3923	0.13	+1.5
4,665,856	+		Psyr_3923	0.19	-0.6
4,665,856	+		Psyr_3923	0.19	+0.6
4,665,857	-		Psyr_3923	0.19	+0.4
4,665,975	+		Psyr_3923	0.32	-1.2
4,665,975	+		Psyr_3923	0.32	-3.3
4,665,976	-		Psyr_3923	0.32	+0.6
4,665,999	+		Psyr_3923	0.35	-1.0
4,666,008	+		Psyr_3923	0.35	+0.5
4,666,009	-		Psyr_3923	0.36	-1.2
4,666,036	-		Psyr_3923	0.38	-0.8
4,666,037	+		Psyr_3923	0.39	-2.4
4,666,068	+		Psyr_3923	0.42	-0.1
4,666,069	-		Psyr_3923	0.42	-0.2
4,666,069	-		Psyr_3923	0.42	+0.1
4,666,069	-		Psyr_3923	0.42	+0.9
4,666,087	+		Psyr_3923	0.44	+0.3
4,666,154	+		Psyr_3923	0.51	+0.2
4,666,155	-		Psyr_3923	0.51	+3.4
4,666,155	-		Psyr_3923	0.51	-0.5
4,666,155	-		Psyr_3923	0.51	-0.6
4,666,155	-		Psyr_3923	0.51	-0.9
4,666,239	+		Psyr_3923	0.60	-0.3
4,666,240	-		Psyr_3923	0.60	-1.0
4,666,240	-		Psyr_3923	0.60	-1.5
4,666,240	-		Psyr_3923	0.60	-0.9
4,666,281	-		Psyr_3923	0.65	+0.8
4,666,325	+		Psyr_3923	0.69	-0.2
4,666,333	+		Psyr_3923	0.70	-0.8
4,666,333	+		Psyr_3923	0.70	-0.4
4,666,333	+		Psyr_3923	0.70	-0.6
4,666,333	+		Psyr_3923	0.70	+0.8
4,666,333	+		Psyr_3923	0.70	-1.2
4,666,333	+		Psyr_3923	0.70	-1.3
4,666,334	-		Psyr_3923	0.70	+0.0
4,666,334	-		Psyr_3923	0.70	+0.1
4,666,334	-		Psyr_3923	0.70	+0.2
4,666,334	-		Psyr_3923	0.70	-1.2
4,666,334	-		Psyr_3923	0.70	-0.5
4,666,365	-		Psyr_3923	0.74	+0.8
4,666,367	+		Psyr_3923	0.74	+0.4
4,666,411	+		Psyr_3923	0.79	-0.4
4,666,412	-		Psyr_3923	0.79	+0.8
4,666,412	-		Psyr_3923	0.79	-0.1
4,666,412	-		Psyr_3923	0.79	+0.2
4,666,605	+				-2.5
4,666,606	-				-1.5
4,666,611	+				+0.1
4,666,611	+				+0.3
4,666,611	+				+1.2
4,666,612	-				+0.1
4,666,612	-				-0.4
4,666,615	+				-1.5
4,666,735	+				+0.1
4,666,763	-				-0.2
4,666,797	+				+0.6
4,666,797	+				+0.1
4,666,798	-				+0.5
4,666,798	-				+0.3
4,666,798	-				-0.2
4,666,801	+				+0.9
4,666,824	+				+1.2
4,666,844	+				-2.3
4,666,844	+				-0.2
4,666,969	+		Psyr_3924	0.20	+0.1
4,666,969	+		Psyr_3924	0.20	-1.4
4,666,969	+		Psyr_3924	0.20	-1.1
4,666,970	-		Psyr_3924	0.20	-1.2
4,667,040	+		Psyr_3924	0.30	-0.5
4,667,040	+		Psyr_3924	0.30	-0.8
4,667,041	-		Psyr_3924	0.30	-1.5
4,667,073	+		Psyr_3924	0.34	+0.5
4,667,073	+		Psyr_3924	0.34	-1.1
4,667,074	-		Psyr_3924	0.34	+0.5
4,667,078	-		Psyr_3924	0.35	+1.4
4,667,078	-		Psyr_3924	0.35	-0.6
4,667,125	+		Psyr_3924	0.42	+0.0
4,667,162	-		Psyr_3924	0.47	-0.2
4,667,166	+		Psyr_3924	0.47	-1.4
4,667,167	-		Psyr_3924	0.47	+0.1
4,667,184	+		Psyr_3924	0.50	-0.8
4,667,269	+		Psyr_3924	0.62	+0.1
4,667,269	+		Psyr_3924	0.62	-0.7
4,667,269	+		Psyr_3924	0.62	-0.7
4,667,270	-		Psyr_3924	0.62	-1.3
4,667,270	-		Psyr_3924	0.62	+1.3
4,667,356	+		Psyr_3924	0.74	+0.1
4,667,356	+		Psyr_3924	0.74	+1.6
4,667,357	-		Psyr_3924	0.74	-1.4
4,667,402	-		Psyr_3924	0.80	-0.7
4,667,402	-		Psyr_3924	0.80	-1.8
4,667,402	-		Psyr_3924	0.80	-0.2
4,667,445	+		Psyr_3924	0.86	+0.8
4,667,446	-		Psyr_3924	0.87	+0.8
4,667,473	+				+1.8
4,667,585	+				-0.6
4,667,585	+				+1.4
4,667,585	+				-0.2
4,667,585	+				+0.8
4,667,585	+				+1.1