Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3904 and Psyr_3905 are separated by 59 nucleotides Psyr_3905 and Psyr_3906 are separated by 99 nucleotides
Psyr_3904: Psyr_3904 - Major intrinsic protein, at 4,645,020 to 4,645,877
_3904
Psyr_3905: Psyr_3905 - glycerol kinase, at 4,645,937 to 4,647,442
_3905
Psyr_3906: Psyr_3906 - regulatory protein, DeoR, at 4,647,542 to 4,648,297
_3906
Position (kb) 4645
4646
4647
4648 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4645.015 kb on + strand at 4645.016 kb on - strand at 4645.197 kb on + strand, within Psyr_3904 at 4645.198 kb on - strand, within Psyr_3904 at 4645.198 kb on - strand, within Psyr_3904 at 4645.198 kb on - strand, within Psyr_3904 at 4645.280 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.294 kb on - strand, within Psyr_3904 at 4645.294 kb on - strand, within Psyr_3904 at 4645.294 kb on - strand, within Psyr_3904 at 4645.294 kb on - strand, within Psyr_3904 at 4645.294 kb on - strand, within Psyr_3904 at 4645.294 kb on - strand, within Psyr_3904 at 4645.294 kb on - strand, within Psyr_3904 at 4645.294 kb on - strand, within Psyr_3904 at 4645.294 kb on - strand, within Psyr_3904 at 4645.294 kb on - strand, within Psyr_3904 at 4645.295 kb on + strand, within Psyr_3904 at 4645.295 kb on + strand, within Psyr_3904 at 4645.296 kb on - strand, within Psyr_3904 at 4645.341 kb on + strand, within Psyr_3904 at 4645.341 kb on + strand, within Psyr_3904 at 4645.342 kb on - strand, within Psyr_3904 at 4645.342 kb on - strand, within Psyr_3904 at 4645.342 kb on - strand, within Psyr_3904 at 4645.350 kb on + strand, within Psyr_3904 at 4645.350 kb on + strand, within Psyr_3904 at 4645.351 kb on - strand, within Psyr_3904 at 4645.351 kb on - strand, within Psyr_3904 at 4645.723 kb on - strand, within Psyr_3904 at 4645.961 kb on + strand at 4645.961 kb on + strand at 4645.961 kb on + strand at 4645.961 kb on + strand at 4645.961 kb on + strand at 4645.961 kb on + strand at 4645.961 kb on + strand at 4645.962 kb on - strand at 4645.962 kb on - strand at 4645.962 kb on - strand at 4646.063 kb on + strand at 4646.240 kb on + strand, within Psyr_3905 at 4646.241 kb on - strand, within Psyr_3905 at 4646.241 kb on - strand, within Psyr_3905 at 4646.315 kb on + strand, within Psyr_3905 at 4646.315 kb on + strand, within Psyr_3905 at 4646.315 kb on + strand, within Psyr_3905 at 4646.315 kb on + strand, within Psyr_3905 at 4646.315 kb on + strand, within Psyr_3905 at 4646.316 kb on - strand, within Psyr_3905 at 4646.316 kb on - strand, within Psyr_3905 at 4646.316 kb on - strand, within Psyr_3905 at 4646.316 kb on - strand, within Psyr_3905 at 4646.316 kb on - strand, within Psyr_3905 at 4646.316 kb on - strand, within Psyr_3905 at 4646.316 kb on - strand, within Psyr_3905 at 4646.351 kb on + strand, within Psyr_3905 at 4646.351 kb on + strand, within Psyr_3905 at 4646.351 kb on + strand, within Psyr_3905 at 4646.352 kb on - strand, within Psyr_3905 at 4646.495 kb on + strand, within Psyr_3905 at 4646.495 kb on + strand, within Psyr_3905 at 4646.495 kb on + strand, within Psyr_3905 at 4646.533 kb on + strand, within Psyr_3905 at 4646.723 kb on + strand, within Psyr_3905 at 4646.723 kb on + strand, within Psyr_3905 at 4646.723 kb on + strand, within Psyr_3905 at 4646.723 kb on + strand, within Psyr_3905 at 4646.724 kb on - strand, within Psyr_3905 at 4646.829 kb on - strand, within Psyr_3905 at 4646.957 kb on + strand, within Psyr_3905 at 4646.957 kb on + strand, within Psyr_3905 at 4646.957 kb on + strand, within Psyr_3905 at 4646.993 kb on + strand, within Psyr_3905 at 4646.993 kb on + strand, within Psyr_3905 at 4646.994 kb on - strand, within Psyr_3905 at 4647.245 kb on - strand, within Psyr_3905 at 4647.377 kb on + strand at 4647.454 kb on + strand at 4647.454 kb on + strand at 4647.454 kb on + strand at 4647.455 kb on - strand at 4647.455 kb on - strand at 4647.455 kb on - strand at 4647.596 kb on + strand at 4647.597 kb on - strand at 4647.714 kb on - strand, within Psyr_3906 at 4647.957 kb on + strand, within Psyr_3906 at 4647.957 kb on + strand, within Psyr_3906 at 4647.958 kb on - strand, within Psyr_3906 at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.424 kb on + strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.425 kb on - strand at 4648.428 kb on + strand at 4648.428 kb on + strand at 4648.428 kb on + strand at 4648.428 kb on + strand at 4648.428 kb on + strand at 4648.429 kb on - strand at 4648.429 kb on - strand at 4648.429 kb on - strand at 4648.429 kb on - strand at 4648.429 kb on - strand at 4648.429 kb on - strand at 4648.429 kb on - strand at 4648.429 kb on - strand at 4648.429 kb on - strand at 4648.429 kb on - strand at 4648.429 kb on - strand at 4648.429 kb on - strand at 4648.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 4,645,015 + -0.2 4,645,016 - -0.8 4,645,197 + Psyr_3904 0.21 +0.2 4,645,198 - Psyr_3904 0.21 +0.1 4,645,198 - Psyr_3904 0.21 +0.2 4,645,198 - Psyr_3904 0.21 -1.1 4,645,280 + Psyr_3904 0.30 +0.5 4,645,293 + Psyr_3904 0.32 +0.8 4,645,293 + Psyr_3904 0.32 -0.6 4,645,293 + Psyr_3904 0.32 +0.2 4,645,293 + Psyr_3904 0.32 +0.3 4,645,293 + Psyr_3904 0.32 +2.4 4,645,293 + Psyr_3904 0.32 -1.8 4,645,293 + Psyr_3904 0.32 -2.4 4,645,293 + Psyr_3904 0.32 -0.2 4,645,293 + Psyr_3904 0.32 -2.0 4,645,293 + Psyr_3904 0.32 -0.8 4,645,293 + Psyr_3904 0.32 -1.4 4,645,293 + Psyr_3904 0.32 -3.2 4,645,293 + Psyr_3904 0.32 +1.8 4,645,293 + Psyr_3904 0.32 +0.3 4,645,293 + Psyr_3904 0.32 -0.8 4,645,293 + Psyr_3904 0.32 -1.5 4,645,294 - Psyr_3904 0.32 -0.8 4,645,294 - Psyr_3904 0.32 +0.8 4,645,294 - Psyr_3904 0.32 -0.2 4,645,294 - Psyr_3904 0.32 +0.4 4,645,294 - Psyr_3904 0.32 -1.4 4,645,294 - Psyr_3904 0.32 -1.5 4,645,294 - Psyr_3904 0.32 -0.2 4,645,294 - Psyr_3904 0.32 -1.8 4,645,294 - Psyr_3904 0.32 -1.5 4,645,294 - Psyr_3904 0.32 -0.2 4,645,295 + Psyr_3904 0.32 -0.5 4,645,295 + Psyr_3904 0.32 +0.1 4,645,296 - Psyr_3904 0.32 -1.8 4,645,341 + Psyr_3904 0.37 +0.2 4,645,341 + Psyr_3904 0.37 +1.1 4,645,342 - Psyr_3904 0.38 -1.5 4,645,342 - Psyr_3904 0.38 +1.8 4,645,342 - Psyr_3904 0.38 -0.8 4,645,350 + Psyr_3904 0.38 +0.2 4,645,350 + Psyr_3904 0.38 -0.5 4,645,351 - Psyr_3904 0.39 -3.0 4,645,351 - Psyr_3904 0.39 -1.4 4,645,723 - Psyr_3904 0.82 -0.4 4,645,961 + -1.2 4,645,961 + -1.2 4,645,961 + -2.4 4,645,961 + -1.4 4,645,961 + -1.8 4,645,961 + -0.5 4,645,961 + -0.4 4,645,962 - -0.2 4,645,962 - -0.2 4,645,962 - +0.8 4,646,063 + -1.2 4,646,240 + Psyr_3905 0.20 +0.8 4,646,241 - Psyr_3905 0.20 -1.5 4,646,241 - Psyr_3905 0.20 -0.4 4,646,315 + Psyr_3905 0.25 -1.5 4,646,315 + Psyr_3905 0.25 +0.2 4,646,315 + Psyr_3905 0.25 -3.2 4,646,315 + Psyr_3905 0.25 -1.2 4,646,315 + Psyr_3905 0.25 -0.8 4,646,316 - Psyr_3905 0.25 +0.1 4,646,316 - Psyr_3905 0.25 +0.2 4,646,316 - Psyr_3905 0.25 -0.2 4,646,316 - Psyr_3905 0.25 +1.4 4,646,316 - Psyr_3905 0.25 -1.2 4,646,316 - Psyr_3905 0.25 +0.1 4,646,316 - Psyr_3905 0.25 -1.2 4,646,351 + Psyr_3905 0.27 +0.1 4,646,351 + Psyr_3905 0.27 -0.6 4,646,351 + Psyr_3905 0.27 +0.2 4,646,352 - Psyr_3905 0.28 -1.4 4,646,495 + Psyr_3905 0.37 -2.8 4,646,495 + Psyr_3905 0.37 +0.8 4,646,495 + Psyr_3905 0.37 +0.2 4,646,533 + Psyr_3905 0.40 -0.4 4,646,723 + Psyr_3905 0.52 -1.4 4,646,723 + Psyr_3905 0.52 -0.8 4,646,723 + Psyr_3905 0.52 -0.8 4,646,723 + Psyr_3905 0.52 -1.2 4,646,724 - Psyr_3905 0.52 -1.2 4,646,829 - Psyr_3905 0.59 -1.8 4,646,957 + Psyr_3905 0.68 -0.3 4,646,957 + Psyr_3905 0.68 -0.6 4,646,957 + Psyr_3905 0.68 -0.4 4,646,993 + Psyr_3905 0.70 +0.5 4,646,993 + Psyr_3905 0.70 -1.5 4,646,994 - Psyr_3905 0.70 -0.2 4,647,245 - Psyr_3905 0.87 -0.5 4,647,377 + -1.2 4,647,454 + -0.2 4,647,454 + -1.1 4,647,454 + +0.0 4,647,455 - -1.5 4,647,455 - -0.2 4,647,455 - +3.1 4,647,596 + -0.4 4,647,597 - +0.3 4,647,714 - Psyr_3906 0.23 +0.8 4,647,957 + Psyr_3906 0.55 -0.4 4,647,957 + Psyr_3906 0.55 -0.3 4,647,958 - Psyr_3906 0.55 +0.8 4,648,424 + +1.6 4,648,424 + -0.4 4,648,424 + +0.8 4,648,424 + -0.4 4,648,424 + +0.0 4,648,424 + +1.8 4,648,424 + +0.1 4,648,424 + +0.9 4,648,424 + +0.5 4,648,424 + +1.3 4,648,424 + -1.5 4,648,424 + +0.8 4,648,424 + -0.0 4,648,424 + +1.0 4,648,424 + -0.4 4,648,424 + +0.1 4,648,424 + +0.2 4,648,424 + -0.2 4,648,424 + +0.3 4,648,424 + +0.8 4,648,424 + -0.2 4,648,424 + -1.9 4,648,424 + -0.2 4,648,424 + +0.3 4,648,425 - +2.1 4,648,425 - +0.5 4,648,425 - -1.6 4,648,425 - -0.2 4,648,425 - -1.5 4,648,425 - -0.3 4,648,425 - -0.6 4,648,425 - +0.1 4,648,425 - +0.5 4,648,425 - +0.8 4,648,425 - +0.4 4,648,425 - +0.1 4,648,425 - +0.1 4,648,425 - -0.3 4,648,425 - +0.3 4,648,425 - -0.1 4,648,425 - +0.8 4,648,425 - -2.0 4,648,425 - -0.5 4,648,425 - -1.2 4,648,425 - -1.0 4,648,425 - +0.4 4,648,425 - +0.0 4,648,425 - +1.0 4,648,425 - -0.1 4,648,425 - +1.2 4,648,425 - -0.5 4,648,425 - +0.4 4,648,425 - +0.6 4,648,425 - +0.2 4,648,428 + -0.0 4,648,428 + -0.5 4,648,428 + +0.8 4,648,428 + -1.2 4,648,428 + -0.2 4,648,429 - -0.8 4,648,429 - -0.3 4,648,429 - -0.6 4,648,429 - -2.0 4,648,429 - -1.5 4,648,429 - -0.3 4,648,429 - -0.6 4,648,429 - +0.8 4,648,429 - -0.6 4,648,429 - +0.3 4,648,429 - +0.2 4,648,429 - -1.0 4,648,429 - +0.7
Or see this region's nucleotide sequence