Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3811 and Psyr_3812 are separated by 95 nucleotides Psyr_3812 and Psyr_3813 are separated by 364 nucleotides Psyr_3813 and Psyr_3814 are separated by 772 nucleotides
Psyr_3811: Psyr_3811 - Transposase IS3/IS911, at 4,532,460 to 4,532,759
_3811
Psyr_3812: Psyr_3812 - CDS, at 4,532,855 to 4,533,283
_3812
Psyr_3813: Psyr_3813 - type III effector HopAF1, at 4,533,648 to 4,534,502
_3813
Psyr_3814: Psyr_3814 - Acetyltransferase, GNAT family, at 4,535,275 to 4,535,808
_3814
Position (kb) 4533
4534
4535 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4532.798 kb on + strand at 4532.826 kb on + strand at 4532.826 kb on + strand at 4532.827 kb on - strand at 4532.827 kb on - strand at 4532.827 kb on - strand at 4532.827 kb on - strand at 4532.827 kb on - strand at 4532.827 kb on - strand at 4532.829 kb on + strand at 4532.829 kb on + strand at 4532.829 kb on + strand at 4532.830 kb on - strand at 4532.830 kb on - strand at 4532.830 kb on - strand at 4532.830 kb on - strand at 4532.830 kb on - strand at 4532.830 kb on - strand at 4532.830 kb on - strand at 4532.833 kb on + strand at 4532.833 kb on + strand at 4532.833 kb on + strand at 4532.834 kb on - strand at 4532.834 kb on - strand at 4532.834 kb on - strand at 4532.834 kb on - strand at 4532.837 kb on + strand at 4532.837 kb on + strand at 4532.837 kb on + strand at 4532.837 kb on + strand at 4532.838 kb on - strand at 4532.838 kb on - strand at 4532.879 kb on + strand at 4532.880 kb on - strand at 4532.880 kb on - strand at 4532.880 kb on - strand at 4533.003 kb on - strand, within Psyr_3812 at 4533.092 kb on + strand, within Psyr_3812 at 4533.093 kb on - strand, within Psyr_3812 at 4533.125 kb on + strand, within Psyr_3812 at 4533.136 kb on - strand, within Psyr_3812 at 4533.136 kb on - strand, within Psyr_3812 at 4533.146 kb on - strand, within Psyr_3812 at 4533.244 kb on + strand at 4533.244 kb on + strand at 4533.244 kb on + strand at 4533.244 kb on + strand at 4533.244 kb on + strand at 4533.380 kb on + strand at 4533.381 kb on - strand at 4533.391 kb on + strand at 4533.391 kb on + strand at 4533.442 kb on + strand at 4533.443 kb on - strand at 4533.443 kb on - strand at 4533.443 kb on - strand at 4533.455 kb on - strand at 4533.455 kb on - strand at 4533.455 kb on - strand at 4533.539 kb on + strand at 4533.584 kb on - strand at 4533.599 kb on - strand at 4533.628 kb on - strand at 4533.655 kb on + strand at 4533.659 kb on + strand at 4533.659 kb on + strand at 4533.659 kb on + strand at 4533.659 kb on + strand at 4533.660 kb on - strand at 4533.684 kb on + strand at 4533.690 kb on + strand at 4533.690 kb on + strand at 4533.691 kb on - strand at 4533.691 kb on - strand at 4533.777 kb on - strand, within Psyr_3813 at 4533.849 kb on + strand, within Psyr_3813 at 4533.850 kb on - strand, within Psyr_3813 at 4533.850 kb on - strand, within Psyr_3813 at 4533.851 kb on + strand, within Psyr_3813 at 4533.852 kb on - strand, within Psyr_3813 at 4533.852 kb on - strand, within Psyr_3813 at 4533.952 kb on + strand, within Psyr_3813 at 4533.952 kb on + strand, within Psyr_3813 at 4533.952 kb on + strand, within Psyr_3813 at 4533.953 kb on - strand, within Psyr_3813 at 4533.954 kb on + strand, within Psyr_3813 at 4533.954 kb on + strand, within Psyr_3813 at 4533.955 kb on - strand, within Psyr_3813 at 4533.955 kb on - strand, within Psyr_3813 at 4533.979 kb on - strand, within Psyr_3813 at 4534.029 kb on + strand, within Psyr_3813 at 4534.029 kb on + strand, within Psyr_3813 at 4534.030 kb on - strand, within Psyr_3813 at 4534.030 kb on - strand, within Psyr_3813 at 4534.030 kb on - strand, within Psyr_3813 at 4534.030 kb on - strand, within Psyr_3813 at 4534.030 kb on - strand, within Psyr_3813 at 4534.030 kb on - strand, within Psyr_3813 at 4534.063 kb on + strand, within Psyr_3813 at 4534.063 kb on + strand, within Psyr_3813 at 4534.064 kb on - strand, within Psyr_3813 at 4534.064 kb on - strand, within Psyr_3813 at 4534.065 kb on + strand, within Psyr_3813 at 4534.066 kb on - strand, within Psyr_3813 at 4534.087 kb on + strand, within Psyr_3813 at 4534.088 kb on - strand, within Psyr_3813 at 4534.088 kb on - strand, within Psyr_3813 at 4534.091 kb on + strand, within Psyr_3813 at 4534.091 kb on + strand, within Psyr_3813 at 4534.091 kb on + strand, within Psyr_3813 at 4534.092 kb on - strand, within Psyr_3813 at 4534.153 kb on + strand, within Psyr_3813 at 4534.153 kb on + strand, within Psyr_3813 at 4534.153 kb on + strand, within Psyr_3813 at 4534.154 kb on - strand, within Psyr_3813 at 4534.154 kb on - strand, within Psyr_3813 at 4534.207 kb on + strand, within Psyr_3813 at 4534.280 kb on + strand, within Psyr_3813 at 4534.281 kb on - strand, within Psyr_3813 at 4534.325 kb on + strand, within Psyr_3813 at 4534.325 kb on + strand, within Psyr_3813 at 4534.326 kb on - strand, within Psyr_3813 at 4534.608 kb on + strand at 4534.609 kb on - strand at 4534.609 kb on - strand at 4534.612 kb on - strand at 4534.612 kb on - strand at 4534.748 kb on - strand at 4534.819 kb on + strand at 4534.903 kb on + strand at 4534.903 kb on + strand at 4534.904 kb on - strand at 4534.914 kb on - strand at 4534.923 kb on + strand at 4534.923 kb on + strand at 4534.924 kb on - strand at 4534.944 kb on + strand at 4534.944 kb on + strand at 4534.944 kb on + strand at 4534.945 kb on - strand at 4534.953 kb on - strand at 4534.953 kb on - strand at 4534.981 kb on + strand at 4534.981 kb on + strand at 4534.981 kb on + strand at 4534.982 kb on - strand at 4534.982 kb on - strand at 4534.982 kb on - strand at 4534.982 kb on - strand at 4535.077 kb on + strand at 4535.077 kb on + strand at 4535.078 kb on - strand at 4535.078 kb on - strand at 4535.078 kb on - strand at 4535.078 kb on - strand at 4535.083 kb on + strand at 4535.083 kb on + strand at 4535.084 kb on - strand at 4535.084 kb on - strand at 4535.086 kb on - strand at 4535.086 kb on - strand at 4535.096 kb on - strand at 4535.123 kb on + strand at 4535.123 kb on + strand at 4535.124 kb on - strand at 4535.125 kb on + strand at 4535.126 kb on - strand at 4535.137 kb on + strand at 4535.137 kb on + strand at 4535.138 kb on - strand at 4535.138 kb on - strand at 4535.138 kb on - strand at 4535.140 kb on + strand at 4535.140 kb on + strand at 4535.140 kb on + strand at 4535.140 kb on + strand at 4535.141 kb on - strand at 4535.141 kb on - strand at 4535.141 kb on - strand at 4535.141 kb on - strand at 4535.141 kb on - strand at 4535.229 kb on - strand at 4535.436 kb on + strand, within Psyr_3814 at 4535.440 kb on + strand, within Psyr_3814 at 4535.441 kb on - strand, within Psyr_3814 at 4535.441 kb on - strand, within Psyr_3814
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 4,532,798 + +0.5 4,532,826 + +0.2 4,532,826 + +0.4 4,532,827 - -0.2 4,532,827 - +0.9 4,532,827 - +1.3 4,532,827 - -0.1 4,532,827 - -0.3 4,532,827 - -0.8 4,532,829 + -1.0 4,532,829 + -0.5 4,532,829 + +0.9 4,532,830 - +0.4 4,532,830 - -1.2 4,532,830 - +0.6 4,532,830 - -0.6 4,532,830 - +0.0 4,532,830 - +1.5 4,532,830 - -0.0 4,532,833 + -0.3 4,532,833 + +0.8 4,532,833 + +0.8 4,532,834 - -1.7 4,532,834 - +0.3 4,532,834 - -0.3 4,532,834 - -0.6 4,532,837 + -1.2 4,532,837 + +0.6 4,532,837 + +0.4 4,532,837 + +0.3 4,532,838 - -0.8 4,532,838 - +0.5 4,532,879 + -0.2 4,532,880 - -0.8 4,532,880 - +0.8 4,532,880 - -0.7 4,533,003 - Psyr_3812 0.34 +0.0 4,533,092 + Psyr_3812 0.55 -0.4 4,533,093 - Psyr_3812 0.55 -1.6 4,533,125 + Psyr_3812 0.63 +1.5 4,533,136 - Psyr_3812 0.66 +1.3 4,533,136 - Psyr_3812 0.66 +1.1 4,533,146 - Psyr_3812 0.68 -0.6 4,533,244 + -0.8 4,533,244 + -0.2 4,533,244 + -0.0 4,533,244 + -0.2 4,533,244 + +0.4 4,533,380 + -1.1 4,533,381 - -0.7 4,533,391 + -0.4 4,533,391 + +0.6 4,533,442 + -1.6 4,533,443 - +0.2 4,533,443 - -0.2 4,533,443 - -0.8 4,533,455 - -1.8 4,533,455 - -3.0 4,533,455 - +0.3 4,533,539 + +0.4 4,533,584 - +0.4 4,533,599 - -0.8 4,533,628 - -2.2 4,533,655 + -0.1 4,533,659 + -0.2 4,533,659 + -1.4 4,533,659 + -0.9 4,533,659 + -0.2 4,533,660 - -0.9 4,533,684 + -0.6 4,533,690 + -1.6 4,533,690 + +0.2 4,533,691 - +1.0 4,533,691 - +0.6 4,533,777 - Psyr_3813 0.15 -0.1 4,533,849 + Psyr_3813 0.24 +1.2 4,533,850 - Psyr_3813 0.24 +0.2 4,533,850 - Psyr_3813 0.24 -0.6 4,533,851 + Psyr_3813 0.24 +0.8 4,533,852 - Psyr_3813 0.24 -0.1 4,533,852 - Psyr_3813 0.24 +0.2 4,533,952 + Psyr_3813 0.36 -0.1 4,533,952 + Psyr_3813 0.36 -0.2 4,533,952 + Psyr_3813 0.36 -2.2 4,533,953 - Psyr_3813 0.36 -0.0 4,533,954 + Psyr_3813 0.36 +0.1 4,533,954 + Psyr_3813 0.36 -0.2 4,533,955 - Psyr_3813 0.36 -2.8 4,533,955 - Psyr_3813 0.36 -0.6 4,533,979 - Psyr_3813 0.39 -1.1 4,534,029 + Psyr_3813 0.45 -0.2 4,534,029 + Psyr_3813 0.45 +0.2 4,534,030 - Psyr_3813 0.45 -1.2 4,534,030 - Psyr_3813 0.45 -1.6 4,534,030 - Psyr_3813 0.45 -1.6 4,534,030 - Psyr_3813 0.45 -0.8 4,534,030 - Psyr_3813 0.45 -0.8 4,534,030 - Psyr_3813 0.45 -0.8 4,534,063 + Psyr_3813 0.49 +0.9 4,534,063 + Psyr_3813 0.49 +0.5 4,534,064 - Psyr_3813 0.49 +0.4 4,534,064 - Psyr_3813 0.49 -1.1 4,534,065 + Psyr_3813 0.49 +0.1 4,534,066 - Psyr_3813 0.49 -0.8 4,534,087 + Psyr_3813 0.51 -0.6 4,534,088 - Psyr_3813 0.51 -0.8 4,534,088 - Psyr_3813 0.51 -1.4 4,534,091 + Psyr_3813 0.52 +0.8 4,534,091 + Psyr_3813 0.52 +0.1 4,534,091 + Psyr_3813 0.52 +0.1 4,534,092 - Psyr_3813 0.52 -1.0 4,534,153 + Psyr_3813 0.59 -1.1 4,534,153 + Psyr_3813 0.59 +0.9 4,534,153 + Psyr_3813 0.59 -1.4 4,534,154 - Psyr_3813 0.59 -2.9 4,534,154 - Psyr_3813 0.59 +0.2 4,534,207 + Psyr_3813 0.65 +1.0 4,534,280 + Psyr_3813 0.74 +0.9 4,534,281 - Psyr_3813 0.74 +1.3 4,534,325 + Psyr_3813 0.79 -1.4 4,534,325 + Psyr_3813 0.79 +0.2 4,534,326 - Psyr_3813 0.79 -1.1 4,534,608 + -0.5 4,534,609 - -1.6 4,534,609 - -0.7 4,534,612 - -0.3 4,534,612 - +1.8 4,534,748 - -0.4 4,534,819 + +0.2 4,534,903 + -1.1 4,534,903 + +1.0 4,534,904 - -0.6 4,534,914 - +0.5 4,534,923 + +0.9 4,534,923 + +0.8 4,534,924 - -0.7 4,534,944 + +0.8 4,534,944 + -0.1 4,534,944 + -0.1 4,534,945 - -0.2 4,534,953 - +0.1 4,534,953 - +0.6 4,534,981 + +0.4 4,534,981 + +0.8 4,534,981 + +0.9 4,534,982 - -2.1 4,534,982 - +0.4 4,534,982 - -0.8 4,534,982 - -0.2 4,535,077 + -0.7 4,535,077 + +0.4 4,535,078 - +0.2 4,535,078 - -0.8 4,535,078 - -2.6 4,535,078 - +0.3 4,535,083 + +0.7 4,535,083 + -0.3 4,535,084 - +0.2 4,535,084 - -1.2 4,535,086 - -0.5 4,535,086 - +1.0 4,535,096 - +1.6 4,535,123 + +0.0 4,535,123 + +0.6 4,535,124 - -0.7 4,535,125 + +0.6 4,535,126 - +0.3 4,535,137 + +0.8 4,535,137 + +1.1 4,535,138 - +0.1 4,535,138 - +1.6 4,535,138 - +0.4 4,535,140 + -1.2 4,535,140 + +0.0 4,535,140 + +1.5 4,535,140 + +0.2 4,535,141 - +0.0 4,535,141 - -0.4 4,535,141 - -0.2 4,535,141 - -0.1 4,535,141 - +1.0 4,535,229 - +0.3 4,535,436 + Psyr_3814 0.30 +1.6 4,535,440 + Psyr_3814 0.31 +0.3 4,535,441 - Psyr_3814 0.31 +0.0 4,535,441 - Psyr_3814 0.31 -0.2
Or see this region's nucleotide sequence