Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3708

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3707 and Psyr_3708 are separated by 394 nucleotidesPsyr_3708 and Psyr_3709 overlap by 4 nucleotidesPsyr_3709 and Psyr_3710 are separated by 27 nucleotides Psyr_3707: Psyr_3707 - Sodium:dicarboxylate symporter, at 4,393,305 to 4,394,657 _3707 Psyr_3708: Psyr_3708 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,395,052 to 4,396,398 _3708 Psyr_3709: Psyr_3709 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,396,395 to 4,397,072 _3709 Psyr_3710: Psyr_3710 - conserved hypothetical protein, at 4,397,100 to 4,397,450 _3710 Position (kb) 4395 4396 4397Strain fitness (log2 ratio) -2 -1 0 1 2at 4394.267 kb on + strand, within Psyr_3707at 4394.294 kb on - strand, within Psyr_3707at 4394.294 kb on - strand, within Psyr_3707at 4394.413 kb on + strand, within Psyr_3707at 4394.413 kb on + strand, within Psyr_3707at 4394.414 kb on - strand, within Psyr_3707at 4394.635 kb on + strandat 4394.636 kb on - strandat 4394.636 kb on - strandat 4394.636 kb on - strandat 4394.711 kb on + strandat 4394.712 kb on - strandat 4394.712 kb on - strandat 4394.713 kb on + strandat 4394.714 kb on - strandat 4394.714 kb on - strandat 4394.782 kb on + strandat 4394.782 kb on + strandat 4394.782 kb on + strandat 4394.782 kb on + strandat 4394.783 kb on - strandat 4394.783 kb on - strandat 4394.783 kb on - strandat 4394.783 kb on - strandat 4394.783 kb on - strandat 4394.783 kb on - strandat 4394.783 kb on - strandat 4394.786 kb on + strandat 4394.787 kb on - strandat 4394.833 kb on + strandat 4394.833 kb on + strandat 4394.834 kb on - strandat 4394.834 kb on - strandat 4394.834 kb on - strandat 4394.857 kb on - strandat 4394.896 kb on - strandat 4395.028 kb on + strandat 4395.028 kb on + strandat 4395.028 kb on + strandat 4395.029 kb on - strandat 4395.029 kb on - strandat 4395.029 kb on - strandat 4395.372 kb on + strand, within Psyr_3708at 4395.620 kb on - strand, within Psyr_3708at 4395.899 kb on + strand, within Psyr_3708at 4395.899 kb on + strand, within Psyr_3708at 4395.899 kb on + strand, within Psyr_3708at 4395.900 kb on - strand, within Psyr_3708at 4395.936 kb on - strand, within Psyr_3708at 4395.963 kb on + strand, within Psyr_3708at 4396.019 kb on + strand, within Psyr_3708at 4396.020 kb on - strand, within Psyr_3708at 4396.020 kb on - strand, within Psyr_3708at 4396.073 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.145 kb on + strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.146 kb on - strand, within Psyr_3708at 4396.151 kb on + strand, within Psyr_3708at 4396.151 kb on + strand, within Psyr_3708at 4396.152 kb on - strand, within Psyr_3708at 4396.152 kb on - strand, within Psyr_3708at 4396.198 kb on + strand, within Psyr_3708at 4396.400 kb on + strandat 4396.401 kb on - strandat 4396.401 kb on - strandat 4396.421 kb on - strandat 4396.421 kb on - strandat 4396.616 kb on - strand, within Psyr_3709at 4396.777 kb on - strand, within Psyr_3709at 4396.777 kb on - strand, within Psyr_3709at 4396.777 kb on - strand, within Psyr_3709at 4396.780 kb on + strand, within Psyr_3709at 4396.781 kb on - strand, within Psyr_3709at 4396.781 kb on - strand, within Psyr_3709at 4396.781 kb on - strand, within Psyr_3709at 4396.961 kb on - strand, within Psyr_3709at 4396.961 kb on - strand, within Psyr_3709at 4396.961 kb on - strand, within Psyr_3709at 4397.135 kb on + strand, within Psyr_3710at 4397.135 kb on + strand, within Psyr_3710at 4397.135 kb on + strand, within Psyr_3710at 4397.179 kb on + strand, within Psyr_3710at 4397.179 kb on + strand, within Psyr_3710at 4397.179 kb on + strand, within Psyr_3710at 4397.179 kb on + strandat 4397.179 kb on + strand, within Psyr_3710at 4397.179 kb on + strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.180 kb on - strand, within Psyr_3710at 4397.258 kb on - strand, within Psyr_3710

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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4,394,267 + Psyr_3707 0.71 +0.6
4,394,294 - Psyr_3707 0.73 +0.9
4,394,294 - Psyr_3707 0.73 +0.0
4,394,413 + Psyr_3707 0.82 -0.6
4,394,413 + Psyr_3707 0.82 +1.2
4,394,414 - Psyr_3707 0.82 -1.0
4,394,635 + -1.3
4,394,636 - -1.9
4,394,636 - -0.6
4,394,636 - +0.7
4,394,711 + -0.2
4,394,712 - +0.7
4,394,712 - -2.4
4,394,713 + +0.7
4,394,714 - -1.9
4,394,714 - -1.3
4,394,782 + +0.7
4,394,782 + -0.6
4,394,782 + +0.5
4,394,782 + -1.9
4,394,783 - -0.3
4,394,783 - +0.3
4,394,783 - +0.9
4,394,783 - -0.4
4,394,783 - -1.3
4,394,783 - +0.1
4,394,783 - +1.7
4,394,786 + -0.7
4,394,787 - -1.3
4,394,833 + -0.2
4,394,833 + +0.7
4,394,834 - -0.9
4,394,834 - -0.0
4,394,834 - -0.3
4,394,857 - +0.6
4,394,896 - -1.1
4,395,028 + -0.3
4,395,028 + +0.2
4,395,028 + +0.7
4,395,029 - -1.9
4,395,029 - -1.7
4,395,029 - +2.0
4,395,372 + Psyr_3708 0.24 +0.3
4,395,620 - Psyr_3708 0.42 +0.4
4,395,899 + Psyr_3708 0.63 -0.6
4,395,899 + Psyr_3708 0.63 -1.1
4,395,899 + Psyr_3708 0.63 +0.6
4,395,900 - Psyr_3708 0.63 +0.3
4,395,936 - Psyr_3708 0.66 -0.3
4,395,963 + Psyr_3708 0.68 +1.3
4,396,019 + Psyr_3708 0.72 +0.7
4,396,020 - Psyr_3708 0.72 +1.3
4,396,020 - Psyr_3708 0.72 +2.0
4,396,073 + Psyr_3708 0.76 +0.1
4,396,145 + Psyr_3708 0.81 +0.3
4,396,145 + Psyr_3708 0.81 -0.1
4,396,145 + Psyr_3708 0.81 -0.8
4,396,145 + Psyr_3708 0.81 -1.3
4,396,145 + Psyr_3708 0.81 -0.5
4,396,145 + Psyr_3708 0.81 +0.3
4,396,145 + Psyr_3708 0.81 +0.7
4,396,145 + Psyr_3708 0.81 -0.0
4,396,145 + Psyr_3708 0.81 +1.7
4,396,146 - Psyr_3708 0.81 -0.0
4,396,146 - Psyr_3708 0.81 +1.4
4,396,146 - Psyr_3708 0.81 +0.7
4,396,146 - Psyr_3708 0.81 -0.5
4,396,146 - Psyr_3708 0.81 +0.3
4,396,146 - Psyr_3708 0.81 +1.3
4,396,146 - Psyr_3708 0.81 -1.0
4,396,146 - Psyr_3708 0.81 -0.9
4,396,146 - Psyr_3708 0.81 -1.1
4,396,146 - Psyr_3708 0.81 +0.3
4,396,146 - Psyr_3708 0.81 +0.9
4,396,146 - Psyr_3708 0.81 -1.6
4,396,151 + Psyr_3708 0.82 +1.0
4,396,151 + Psyr_3708 0.82 -1.1
4,396,152 - Psyr_3708 0.82 -0.1
4,396,152 - Psyr_3708 0.82 +1.1
4,396,198 + Psyr_3708 0.85 -0.3
4,396,400 + -0.4
4,396,401 - -0.1
4,396,401 - +1.3
4,396,421 - +0.7
4,396,421 - -0.1
4,396,616 - Psyr_3709 0.33 +0.0
4,396,777 - Psyr_3709 0.56 +0.7
4,396,777 - Psyr_3709 0.56 -0.5
4,396,777 - Psyr_3709 0.56 +0.5
4,396,780 + Psyr_3709 0.57 +0.2
4,396,781 - Psyr_3709 0.57 -0.1
4,396,781 - Psyr_3709 0.57 +0.1
4,396,781 - Psyr_3709 0.57 +1.6
4,396,961 - Psyr_3709 0.83 -1.9
4,396,961 - Psyr_3709 0.83 +1.5
4,396,961 - Psyr_3709 0.83 +2.3
4,397,135 + Psyr_3710 0.10 -1.0
4,397,135 + Psyr_3710 0.10 +0.6
4,397,135 + Psyr_3710 0.10 -0.7
4,397,179 + Psyr_3710 0.23 -0.9
4,397,179 + Psyr_3710 0.23 -1.4
4,397,179 + Psyr_3710 0.23 +0.4
4,397,179 + +0.7
4,397,179 + Psyr_3710 0.23 +0.4
4,397,179 + Psyr_3710 0.23 -0.6
4,397,180 - Psyr_3710 0.23 -0.8
4,397,180 - Psyr_3710 0.23 +0.4
4,397,180 - Psyr_3710 0.23 +1.4
4,397,180 - Psyr_3710 0.23 +2.3
4,397,180 - Psyr_3710 0.23 +0.5
4,397,180 - Psyr_3710 0.23 +0.0
4,397,258 - Psyr_3710 0.45 +1.4

Or see this region's nucleotide sequence