Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3637

Experiment: KB with Trimethoprim 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3636 and Psyr_3637 are separated by 104 nucleotidesPsyr_3637 and Psyr_3638 overlap by 8 nucleotides Psyr_3636: Psyr_3636 - Polysaccharide biosynthesis protein CapD, at 4,316,968 to 4,318,962 _3636 Psyr_3637: Psyr_3637 - Glycosyl transferase, family 4, at 4,319,067 to 4,320,077 _3637 Psyr_3638: Psyr_3638 - UDP-glucose 4-epimerase, putative, at 4,320,070 to 4,321,050 _3638 Position (kb) 4319 4320 4321Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4318.210 kb on + strand, within Psyr_3636at 4318.210 kb on + strand, within Psyr_3636at 4318.210 kb on + strand, within Psyr_3636at 4318.210 kb on + strand, within Psyr_3636at 4318.211 kb on - strand, within Psyr_3636at 4318.211 kb on - strand, within Psyr_3636at 4318.211 kb on - strand, within Psyr_3636at 4318.312 kb on + strand, within Psyr_3636at 4318.312 kb on + strand, within Psyr_3636at 4318.313 kb on - strand, within Psyr_3636at 4318.313 kb on - strand, within Psyr_3636at 4318.340 kb on + strand, within Psyr_3636at 4318.466 kb on + strand, within Psyr_3636at 4318.547 kb on + strand, within Psyr_3636at 4318.547 kb on + strand, within Psyr_3636at 4318.548 kb on - strand, within Psyr_3636at 4318.548 kb on - strand, within Psyr_3636at 4318.548 kb on - strand, within Psyr_3636at 4318.548 kb on - strand, within Psyr_3636at 4318.548 kb on - strand, within Psyr_3636at 4318.602 kb on - strand, within Psyr_3636at 4318.641 kb on + strand, within Psyr_3636at 4318.641 kb on + strand, within Psyr_3636at 4318.647 kb on - strand, within Psyr_3636at 4318.647 kb on - strand, within Psyr_3636at 4318.652 kb on + strand, within Psyr_3636at 4318.652 kb on + strand, within Psyr_3636at 4318.652 kb on + strand, within Psyr_3636at 4318.653 kb on - strand, within Psyr_3636at 4318.653 kb on - strand, within Psyr_3636at 4318.653 kb on - strand, within Psyr_3636at 4318.653 kb on - strand, within Psyr_3636at 4318.659 kb on + strand, within Psyr_3636at 4318.659 kb on + strand, within Psyr_3636at 4318.659 kb on + strand, within Psyr_3636at 4318.660 kb on - strand, within Psyr_3636at 4318.727 kb on + strand, within Psyr_3636at 4318.727 kb on + strand, within Psyr_3636at 4318.728 kb on - strand, within Psyr_3636at 4318.728 kb on - strand, within Psyr_3636at 4318.745 kb on + strand, within Psyr_3636at 4318.849 kb on + strandat 4318.887 kb on + strandat 4318.887 kb on + strandat 4318.888 kb on - strandat 4318.909 kb on + strandat 4318.909 kb on + strandat 4318.910 kb on - strandat 4318.939 kb on + strandat 4318.973 kb on - strandat 4319.030 kb on + strandat 4319.030 kb on + strandat 4319.030 kb on + strandat 4319.030 kb on + strandat 4319.030 kb on + strandat 4319.030 kb on + strandat 4319.030 kb on + strandat 4319.030 kb on + strandat 4319.030 kb on + strandat 4319.030 kb on + strandat 4319.030 kb on + strandat 4319.030 kb on + strandat 4319.030 kb on + strandat 4319.031 kb on - strandat 4319.031 kb on - strandat 4319.031 kb on - strandat 4319.031 kb on - strandat 4319.031 kb on - strandat 4319.031 kb on - strandat 4319.031 kb on - strandat 4319.031 kb on - strandat 4319.031 kb on - strandat 4319.031 kb on - strandat 4319.031 kb on - strandat 4319.031 kb on - strandat 4319.063 kb on + strandat 4319.069 kb on - strandat 4319.128 kb on - strandat 4319.128 kb on - strandat 4319.136 kb on + strandat 4319.136 kb on + strandat 4319.136 kb on + strandat 4319.136 kb on + strandat 4319.136 kb on + strandat 4319.136 kb on + strandat 4319.137 kb on - strandat 4319.137 kb on - strandat 4319.137 kb on - strandat 4319.137 kb on - strandat 4319.137 kb on - strandat 4319.138 kb on + strandat 4319.138 kb on + strandat 4319.138 kb on + strandat 4319.138 kb on + strandat 4319.138 kb on + strandat 4319.138 kb on + strandat 4319.138 kb on + strandat 4319.138 kb on + strandat 4319.138 kb on + strandat 4319.138 kb on + strandat 4319.138 kb on + strandat 4319.138 kb on + strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.139 kb on - strandat 4319.169 kb on + strand, within Psyr_3637at 4319.219 kb on + strand, within Psyr_3637at 4319.302 kb on - strand, within Psyr_3637at 4319.373 kb on + strand, within Psyr_3637at 4319.457 kb on + strand, within Psyr_3637at 4319.457 kb on + strand, within Psyr_3637at 4319.457 kb on + strand, within Psyr_3637at 4319.457 kb on + strand, within Psyr_3637at 4319.458 kb on - strand, within Psyr_3637at 4319.458 kb on - strand, within Psyr_3637at 4319.458 kb on - strand, within Psyr_3637at 4319.517 kb on + strand, within Psyr_3637at 4319.517 kb on + strand, within Psyr_3637at 4319.518 kb on - strand, within Psyr_3637at 4319.518 kb on - strand, within Psyr_3637at 4319.518 kb on - strand, within Psyr_3637at 4319.518 kb on - strand, within Psyr_3637at 4319.554 kb on + strand, within Psyr_3637at 4319.554 kb on + strand, within Psyr_3637at 4319.554 kb on + strand, within Psyr_3637at 4319.554 kb on + strand, within Psyr_3637at 4319.555 kb on - strand, within Psyr_3637at 4319.555 kb on - strand, within Psyr_3637at 4319.558 kb on + strand, within Psyr_3637at 4319.558 kb on + strand, within Psyr_3637at 4319.558 kb on + strand, within Psyr_3637at 4319.558 kb on + strand, within Psyr_3637at 4319.558 kb on + strand, within Psyr_3637at 4319.558 kb on + strand, within Psyr_3637at 4319.559 kb on - strand, within Psyr_3637at 4319.559 kb on - strand, within Psyr_3637at 4319.559 kb on - strand, within Psyr_3637at 4319.559 kb on - strand, within Psyr_3637at 4319.559 kb on - strand, within Psyr_3637at 4319.577 kb on + strand, within Psyr_3637at 4319.577 kb on + strand, within Psyr_3637at 4319.577 kb on + strand, within Psyr_3637at 4319.577 kb on + strand, within Psyr_3637at 4319.578 kb on - strand, within Psyr_3637at 4319.578 kb on - strand, within Psyr_3637at 4319.610 kb on + strand, within Psyr_3637at 4319.611 kb on - strand, within Psyr_3637at 4319.629 kb on + strand, within Psyr_3637at 4319.629 kb on + strand, within Psyr_3637at 4319.629 kb on + strand, within Psyr_3637at 4319.630 kb on - strand, within Psyr_3637at 4319.630 kb on - strand, within Psyr_3637at 4319.630 kb on - strand, within Psyr_3637at 4319.630 kb on - strand, within Psyr_3637at 4319.630 kb on - strand, within Psyr_3637at 4319.631 kb on + strand, within Psyr_3637at 4319.631 kb on + strand, within Psyr_3637at 4319.631 kb on + strand, within Psyr_3637at 4319.631 kb on + strand, within Psyr_3637at 4319.631 kb on + strand, within Psyr_3637at 4319.631 kb on + strand, within Psyr_3637at 4319.631 kb on + strand, within Psyr_3637at 4319.631 kb on + strand, within Psyr_3637at 4319.631 kb on + strand, within Psyr_3637at 4319.631 kb on + strand, within Psyr_3637at 4319.631 kb on + strand, within Psyr_3637at 4319.631 kb on + strand, within Psyr_3637at 4319.632 kb on - strand, within Psyr_3637at 4319.632 kb on - strand, within Psyr_3637at 4319.632 kb on - strand, within Psyr_3637at 4319.632 kb on - strand, within Psyr_3637at 4319.632 kb on - strand, within Psyr_3637at 4319.632 kb on - strand, within Psyr_3637at 4319.632 kb on - strand, within Psyr_3637at 4319.632 kb on - strand, within Psyr_3637at 4319.632 kb on - strand, within Psyr_3637at 4319.632 kb on - strand, within Psyr_3637at 4319.653 kb on + strand, within Psyr_3637at 4319.653 kb on + strand, within Psyr_3637at 4319.654 kb on - strand, within Psyr_3637at 4319.654 kb on - strand, within Psyr_3637at 4319.654 kb on - strand, within Psyr_3637at 4319.654 kb on - strand, within Psyr_3637at 4320.007 kb on + strandat 4320.007 kb on + strandat 4320.007 kb on + strandat 4320.007 kb on + strandat 4320.008 kb on - strandat 4320.008 kb on - strandat 4320.008 kb on - strandat 4320.095 kb on + strandat 4320.095 kb on + strandat 4320.096 kb on - strandat 4320.099 kb on - strandat 4320.159 kb on + strandat 4320.519 kb on - strand, within Psyr_3638at 4320.666 kb on + strand, within Psyr_3638at 4320.666 kb on + strand, within Psyr_3638at 4320.666 kb on + strand, within Psyr_3638at 4320.666 kb on + strand, within Psyr_3638at 4320.666 kb on + strand, within Psyr_3638at 4320.667 kb on - strand, within Psyr_3638at 4320.696 kb on + strand, within Psyr_3638at 4320.773 kb on + strand, within Psyr_3638at 4320.929 kb on + strand, within Psyr_3638at 4320.929 kb on + strand, within Psyr_3638at 4320.929 kb on + strand, within Psyr_3638at 4320.929 kb on + strand, within Psyr_3638at 4320.930 kb on - strand, within Psyr_3638at 4320.930 kb on - strand, within Psyr_3638at 4321.021 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml
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4,318,210 + Psyr_3636 0.62 -1.3
4,318,210 + Psyr_3636 0.62 -1.8
4,318,210 + Psyr_3636 0.62 +0.7
4,318,210 + Psyr_3636 0.62 -0.8
4,318,211 - Psyr_3636 0.62 -1.3
4,318,211 - Psyr_3636 0.62 +1.4
4,318,211 - Psyr_3636 0.62 -0.9
4,318,312 + Psyr_3636 0.67 -1.6
4,318,312 + Psyr_3636 0.67 -1.6
4,318,313 - Psyr_3636 0.67 +0.2
4,318,313 - Psyr_3636 0.67 +0.1
4,318,340 + Psyr_3636 0.69 -0.0
4,318,466 + Psyr_3636 0.75 +0.7
4,318,547 + Psyr_3636 0.79 +2.1
4,318,547 + Psyr_3636 0.79 -2.3
4,318,548 - Psyr_3636 0.79 +0.3
4,318,548 - Psyr_3636 0.79 +0.7
4,318,548 - Psyr_3636 0.79 +0.5
4,318,548 - Psyr_3636 0.79 -0.1
4,318,548 - Psyr_3636 0.79 +0.7
4,318,602 - Psyr_3636 0.82 +0.4
4,318,641 + Psyr_3636 0.84 -2.8
4,318,641 + Psyr_3636 0.84 -2.5
4,318,647 - Psyr_3636 0.84 +0.2
4,318,647 - Psyr_3636 0.84 -0.3
4,318,652 + Psyr_3636 0.84 -1.0
4,318,652 + Psyr_3636 0.84 +0.7
4,318,652 + Psyr_3636 0.84 -1.2
4,318,653 - Psyr_3636 0.84 +0.7
4,318,653 - Psyr_3636 0.84 +0.9
4,318,653 - Psyr_3636 0.84 -0.9
4,318,653 - Psyr_3636 0.84 -1.2
4,318,659 + Psyr_3636 0.85 -0.9
4,318,659 + Psyr_3636 0.85 -3.5
4,318,659 + Psyr_3636 0.85 -2.5
4,318,660 - Psyr_3636 0.85 -0.7
4,318,727 + Psyr_3636 0.88 -2.3
4,318,727 + Psyr_3636 0.88 -0.1
4,318,728 - Psyr_3636 0.88 +1.4
4,318,728 - Psyr_3636 0.88 -1.0
4,318,745 + Psyr_3636 0.89 -1.3
4,318,849 + -2.1
4,318,887 + -1.5
4,318,887 + -2.6
4,318,888 - -0.2
4,318,909 + -0.3
4,318,909 + -1.3
4,318,910 - +1.9
4,318,939 + -2.1
4,318,973 - +0.2
4,319,030 + +0.7
4,319,030 + -0.5
4,319,030 + +0.7
4,319,030 + +1.3
4,319,030 + +0.7
4,319,030 + -0.6
4,319,030 + -0.5
4,319,030 + +1.7
4,319,030 + +0.8
4,319,030 + -0.9
4,319,030 + -0.9
4,319,030 + -1.4
4,319,030 + +1.7
4,319,031 - -1.4
4,319,031 - +0.8
4,319,031 - -0.8
4,319,031 - +0.2
4,319,031 - +0.3
4,319,031 - +0.5
4,319,031 - +0.0
4,319,031 - +0.5
4,319,031 - +0.6
4,319,031 - +1.1
4,319,031 - -0.5
4,319,031 - -0.9
4,319,063 + +1.7
4,319,069 - +0.0
4,319,128 - -1.0
4,319,128 - +1.3
4,319,136 + -3.1
4,319,136 + -2.5
4,319,136 + -1.6
4,319,136 + -1.5
4,319,136 + -2.1
4,319,136 + -1.5
4,319,137 - -0.1
4,319,137 - -1.9
4,319,137 - -0.9
4,319,137 - -0.1
4,319,137 - -1.6
4,319,138 + -4.1
4,319,138 + -2.4
4,319,138 + -2.0
4,319,138 + -2.5
4,319,138 + -0.8
4,319,138 + -1.0
4,319,138 + +0.1
4,319,138 + -1.9
4,319,138 + -2.7
4,319,138 + -2.3
4,319,138 + -2.5
4,319,138 + -3.2
4,319,139 - -2.8
4,319,139 - -0.6
4,319,139 - -0.7
4,319,139 - +0.7
4,319,139 - -1.3
4,319,139 - +0.2
4,319,139 - -3.4
4,319,139 - -1.1
4,319,139 - -1.3
4,319,139 - -0.9
4,319,139 - +1.1
4,319,139 - -0.9
4,319,139 - -1.4
4,319,139 - -1.9
4,319,139 - +0.7
4,319,139 - -1.5
4,319,139 - -1.3
4,319,139 - -1.8
4,319,139 - -1.5
4,319,139 - -0.7
4,319,139 - -1.6
4,319,169 + Psyr_3637 0.10 -0.1
4,319,219 + Psyr_3637 0.15 -1.1
4,319,302 - Psyr_3637 0.23 -0.5
4,319,373 + Psyr_3637 0.30 -0.9
4,319,457 + Psyr_3637 0.39 -1.1
4,319,457 + Psyr_3637 0.39 +0.2
4,319,457 + Psyr_3637 0.39 -1.9
4,319,457 + Psyr_3637 0.39 -0.1
4,319,458 - Psyr_3637 0.39 -2.3
4,319,458 - Psyr_3637 0.39 -2.0
4,319,458 - Psyr_3637 0.39 -0.9
4,319,517 + Psyr_3637 0.45 -0.7
4,319,517 + Psyr_3637 0.45 +1.0
4,319,518 - Psyr_3637 0.45 -0.6
4,319,518 - Psyr_3637 0.45 +0.7
4,319,518 - Psyr_3637 0.45 -1.8
4,319,518 - Psyr_3637 0.45 +1.0
4,319,554 + Psyr_3637 0.48 -1.0
4,319,554 + Psyr_3637 0.48 -0.2
4,319,554 + Psyr_3637 0.48 -0.9
4,319,554 + Psyr_3637 0.48 -0.1
4,319,555 - Psyr_3637 0.48 +1.0
4,319,555 - Psyr_3637 0.48 -0.9
4,319,558 + Psyr_3637 0.49 +0.1
4,319,558 + Psyr_3637 0.49 -2.3
4,319,558 + Psyr_3637 0.49 -1.0
4,319,558 + Psyr_3637 0.49 -1.5
4,319,558 + Psyr_3637 0.49 -0.8
4,319,558 + Psyr_3637 0.49 +1.1
4,319,559 - Psyr_3637 0.49 +0.7
4,319,559 - Psyr_3637 0.49 -1.2
4,319,559 - Psyr_3637 0.49 -0.4
4,319,559 - Psyr_3637 0.49 -0.6
4,319,559 - Psyr_3637 0.49 -2.1
4,319,577 + Psyr_3637 0.50 -1.2
4,319,577 + Psyr_3637 0.50 -0.3
4,319,577 + Psyr_3637 0.50 -0.9
4,319,577 + Psyr_3637 0.50 -1.4
4,319,578 - Psyr_3637 0.51 -0.3
4,319,578 - Psyr_3637 0.51 -0.8
4,319,610 + Psyr_3637 0.54 -1.9
4,319,611 - Psyr_3637 0.54 -0.5
4,319,629 + Psyr_3637 0.56 +0.5
4,319,629 + Psyr_3637 0.56 +0.7
4,319,629 + Psyr_3637 0.56 -1.8
4,319,630 - Psyr_3637 0.56 -0.6
4,319,630 - Psyr_3637 0.56 -0.6
4,319,630 - Psyr_3637 0.56 -1.9
4,319,630 - Psyr_3637 0.56 -0.4
4,319,630 - Psyr_3637 0.56 -1.3
4,319,631 + Psyr_3637 0.56 -0.6
4,319,631 + Psyr_3637 0.56 -0.6
4,319,631 + Psyr_3637 0.56 -0.5
4,319,631 + Psyr_3637 0.56 -0.6
4,319,631 + Psyr_3637 0.56 -2.6
4,319,631 + Psyr_3637 0.56 -2.6
4,319,631 + Psyr_3637 0.56 -1.6
4,319,631 + Psyr_3637 0.56 -1.7
4,319,631 + Psyr_3637 0.56 -0.9
4,319,631 + Psyr_3637 0.56 +0.2
4,319,631 + Psyr_3637 0.56 +0.2
4,319,631 + Psyr_3637 0.56 -0.6
4,319,632 - Psyr_3637 0.56 -2.0
4,319,632 - Psyr_3637 0.56 -0.8
4,319,632 - Psyr_3637 0.56 -1.6
4,319,632 - Psyr_3637 0.56 -1.3
4,319,632 - Psyr_3637 0.56 +0.7
4,319,632 - Psyr_3637 0.56 -1.3
4,319,632 - Psyr_3637 0.56 +0.7
4,319,632 - Psyr_3637 0.56 -0.5
4,319,632 - Psyr_3637 0.56 +0.3
4,319,632 - Psyr_3637 0.56 -0.7
4,319,653 + Psyr_3637 0.58 -0.3
4,319,653 + Psyr_3637 0.58 +0.1
4,319,654 - Psyr_3637 0.58 -0.9
4,319,654 - Psyr_3637 0.58 -0.2
4,319,654 - Psyr_3637 0.58 +1.3
4,319,654 - Psyr_3637 0.58 +1.7
4,320,007 + -2.1
4,320,007 + -1.4
4,320,007 + -0.3
4,320,007 + -1.6
4,320,008 - -0.3
4,320,008 - +0.5
4,320,008 - +1.4
4,320,095 + +1.3
4,320,095 + -0.3
4,320,096 - -0.9
4,320,099 - -0.1
4,320,159 + +2.3
4,320,519 - Psyr_3638 0.46 +0.3
4,320,666 + Psyr_3638 0.61 +1.4
4,320,666 + Psyr_3638 0.61 -2.3
4,320,666 + Psyr_3638 0.61 -1.1
4,320,666 + Psyr_3638 0.61 -0.9
4,320,666 + Psyr_3638 0.61 +0.0
4,320,667 - Psyr_3638 0.61 -0.3
4,320,696 + Psyr_3638 0.64 +0.0
4,320,773 + Psyr_3638 0.72 +0.3
4,320,929 + Psyr_3638 0.88 -0.6
4,320,929 + Psyr_3638 0.88 +0.7
4,320,929 + Psyr_3638 0.88 +1.1
4,320,929 + Psyr_3638 0.88 -0.3
4,320,930 - Psyr_3638 0.88 -1.1
4,320,930 - Psyr_3638 0.88 -0.3
4,321,021 + +0.7

Or see this region's nucleotide sequence