Experiment: KB with Trimethoprim 125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3619 and Psyr_3620 are separated by 69 nucleotides Psyr_3620 and Psyr_3621 are separated by 135 nucleotides
Psyr_3619: Psyr_3619 - Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal, at 4,303,040 to 4,304,713
_3619
Psyr_3620: Psyr_3620 - hypothetical protein, at 4,304,783 to 4,305,031
_3620
Psyr_3621: Psyr_3621 - conserved hypothetical protein, at 4,305,167 to 4,305,928
_3621
Position (kb) 4304
4305
4306 Strain fitness (log2 ratio) -2
-1
0
1 at 4304.895 kb on - strand, within Psyr_3620 at 4304.931 kb on - strand, within Psyr_3620 at 4304.931 kb on - strand, within Psyr_3620 at 4304.951 kb on - strand, within Psyr_3620 at 4305.077 kb on + strand at 4305.077 kb on + strand at 4305.077 kb on + strand at 4305.164 kb on + strand at 4305.164 kb on + strand at 4305.165 kb on - strand at 4305.184 kb on + strand at 4305.342 kb on + strand, within Psyr_3621 at 4305.492 kb on + strand, within Psyr_3621 at 4305.493 kb on - strand, within Psyr_3621 at 4305.493 kb on - strand, within Psyr_3621 at 4305.493 kb on - strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.762 kb on + strand, within Psyr_3621 at 4305.763 kb on - strand, within Psyr_3621 at 4305.793 kb on + strand, within Psyr_3621 at 4305.794 kb on - strand, within Psyr_3621 at 4305.794 kb on - strand, within Psyr_3621 at 4305.962 kb on + strand at 4306.008 kb on - strand at 4306.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Trimethoprim 125 ug/ml remove 4,304,895 - Psyr_3620 0.45 -1.3 4,304,931 - Psyr_3620 0.59 -1.3 4,304,931 - Psyr_3620 0.59 -1.9 4,304,951 - Psyr_3620 0.67 +1.4 4,305,077 + +0.1 4,305,077 + +0.5 4,305,077 + +0.4 4,305,164 + -0.3 4,305,164 + -0.6 4,305,165 - -1.9 4,305,184 + -0.4 4,305,342 + Psyr_3621 0.23 +0.2 4,305,492 + Psyr_3621 0.43 -0.8 4,305,493 - Psyr_3621 0.43 -0.3 4,305,493 - Psyr_3621 0.43 -0.5 4,305,493 - Psyr_3621 0.43 +1.3 4,305,564 + Psyr_3621 0.52 -0.3 4,305,564 + Psyr_3621 0.52 -1.2 4,305,564 + Psyr_3621 0.52 +0.0 4,305,564 + Psyr_3621 0.52 +0.4 4,305,564 + Psyr_3621 0.52 +0.1 4,305,564 + Psyr_3621 0.52 -1.6 4,305,564 + Psyr_3621 0.52 -1.4 4,305,564 + Psyr_3621 0.52 +1.3 4,305,564 + Psyr_3621 0.52 +0.1 4,305,564 + Psyr_3621 0.52 +0.3 4,305,564 + Psyr_3621 0.52 -0.4 4,305,564 + Psyr_3621 0.52 -1.3 4,305,565 - Psyr_3621 0.52 -0.3 4,305,565 - Psyr_3621 0.52 -0.3 4,305,565 - Psyr_3621 0.52 +0.5 4,305,565 - Psyr_3621 0.52 -0.1 4,305,565 - Psyr_3621 0.52 -0.1 4,305,565 - Psyr_3621 0.52 +0.7 4,305,565 - Psyr_3621 0.52 +0.3 4,305,565 - Psyr_3621 0.52 +0.0 4,305,565 - Psyr_3621 0.52 -1.9 4,305,565 - Psyr_3621 0.52 +1.0 4,305,565 - Psyr_3621 0.52 +0.1 4,305,565 - Psyr_3621 0.52 +0.7 4,305,565 - Psyr_3621 0.52 -1.6 4,305,565 - Psyr_3621 0.52 +0.6 4,305,565 - Psyr_3621 0.52 +0.3 4,305,762 + Psyr_3621 0.78 -0.3 4,305,763 - Psyr_3621 0.78 -0.4 4,305,793 + Psyr_3621 0.82 -0.1 4,305,794 - Psyr_3621 0.82 -1.0 4,305,794 - Psyr_3621 0.82 +0.4 4,305,962 + +0.4 4,306,008 - +1.3 4,306,008 - -0.3
Or see this region's nucleotide sequence